Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.

Nikos C Kyrpides , Nikos C Kyrpides , Trent R Northen , Trent R Northen
Frontiers in Microbiology 12 632731 -632731

2021
Genome meets epigenome: Sequencing and analysis of the DNA methylome

Joseph R. Ecker , Ryan Lister , Ronan C. O'Malley , Julian Tonti-Filippini
Developmental Biology 319 ( 2) 462

2008
Ethylene Perception in Arabidopsis by the ETRl Receptor Family

Ronan C. O'Malley , Anthony B. Bleecker
Histidine Kinases in Signal Transduction 439 -457

2003
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

Ronan C. O’Malley , Shao-shan Carol Huang , Liang Song , Mathew G. Lewsey
Cell 165 ( 5) 1280 -1292

977
2016
DOE JGI Metagenome Workflow.

Nikos C. Kyrpides , Supratim Mukherjee , Alicia Clum , Natalia N. Ivanova
Msystems 6 ( 3)

36
2021
Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug.

Desiree J Meyers , Brittany A Leigh , Marcel Huntemann , Alicia Clum
Microbiology Resource Announcements 9 ( 15)

2020
Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source.

Gina Chaput , Jacob Ford , Lani DeDiego , Achala Narayanan
Microbiology Resource Announcements 8 ( 18)

2019
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

Ryan Lister , Mattia Pelizzola , Yasuyuki S. Kida , R. David Hawkins
Nature 471 ( 7336) 68 -73

1,689
2011
Voltage-dependent gating of SV channel TPC1 confers vacuole excitability.

Dawid Jaślan , Ingo Dreyer , Jinping Lu , Ronan O’Malley
Nature Communications 10 ( 1) 1 -9

21
2019
Draft Genome Sequences of New Isolates and the Known Species of the Family Microbacteriaceae Associated with Plants.

Oleg V Vasilenko , Irina P Starodumova , Lubov V Dorofeeva , Sergey V Tarlachkov
Microbiology Resource Announcements 7 ( 11)

1
2018
Genomics of plant cell wall biogenesis.

Weidong Yong , Bruce Link , Ronan O’Malley , Jagdish Tewari
Planta 221 ( 6) 747 -751

96
2005
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.

Volkan Sevim , Juna Lee , Robert Egan , Alicia Clum
Scientific Data 6 ( 1) 285

74
2019
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass

Guangchao Sun , Nishikant Wase , Shengqiang Shu , Jerry Jenkins
Nature communications 13 ( 1) 7731

1
2022
Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium

Gina Chaput , Jacob Ford , Lani DeDiego , Achala Narayanan
Microbiology spectrum 10 ( 3) e02346 -21

4
2022
Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis

Karen Serrano , Margaret Bezrutczyk , Danielle Goudeau , Thai Dao
Nature Plants 1 -16

3
2024
Correction: Corrigendum: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

Ryan Lister , Mattia Pelizzola , Yasuyuki S Kida , R David Hawkins
Nature 514 ( 7520) 126 -126

3
2014
New Capabilities and Technologies in Plant Functional Genomics at the Joint Genome Institute

Juna Lee , Cindy Chen , Hope Hundley , Rita Kuo
Plant and Animal Genome XXVI Conference (January 13-17, 2018)

2018
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Lifeng Liu , Yuko Yoshinaga , Matthew Blow , Ronan O’Malley
Plant and Animal Genome XXVI Conference (January 13-17, 2018)

The genome of stress tolerant crop wild relative Paspalum vaginatum leads to increased biomass productivity in the crop Zea mays

Guangchao Sun , Nishikant Wase , Shengqiang Shu , Jerry Jenkins
bioRxiv 2021.08. 18.456832 -2021.08. 18.456832

1
2021