Annotation of the Staphylococcus aureus Metabolome Using Liquid Chromatography Coupled to High-Resolution Mass Spectrometry and Application to the Study of Methicillin Resistance.

作者: Sandrine Aros-Calt , Bruno H. Muller , Samia Boudah , Céline Ducruix , Gaspard Gervasi

DOI: 10.1021/ACS.JPROTEOME.5B00697

关键词: PathogenMetabolomeAntibiotic resistanceHydrophilic interaction chromatographyBiologyMethicillin-resistant Staphylococcus aureusMetabolomicsChromatographyStaphylococcus aureusPeptidoglycan

摘要: Staphylococcus aureus can cause a variety of severe disease patterns and readily acquire antibiotic resistance; however, the mechanisms by which this commensal becomes pathogen or develops resistance are still poorly understood. Here we asked whether metabolomics be used to distinguish bacterial strains with different susceptibilities. Thus, an efficient robust method was first thoroughly implemented measure intracellular metabolites S. in unbiased reproducible manner. We also placed special emphasis on metabolome coverage annotation both hydrophilic interaction liquid chromatography pentafluorophenyl-propyl columns coupled high-resolution mass spectrometry conjunction our spectral database developed in-house identify high confidence as many meaningful possible. Overall, were able characterize up 210 aureus, represents substantial ∼50% improvement over previously published data. then preliminarily compared metabolic profiles 10 clinically relevant methicillin-resistant susceptible harvested at time points during exponential growth phase (without any exposure). Interestingly, resulting data revealed distinct behavior "slow-growing" resistant strains, show modified levels several precursors peptidoglycan capsular polysaccharide biosynthesis.

参考文章(60)
Carsten Kuhl, Ralf Tautenhahn, Christoph Böttcher, Tony R. Larson, Steffen Neumann, CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets. Analytical Chemistry. ,vol. 84, pp. 283- 289 ,(2012) , 10.1021/AC202450G
Rosmarie Gaupp, Shulei Lei, Joseph M. Reed, Henrik Peisker, Susan Boyle-Vavra, Arnold S. Bayer, Markus Bischoff, Mathias Herrmann, Robert S. Daum, Robert Powers, Greg A. Somerville, Staphylococcus aureus Metabolic Adaptations during the Transition from a Daptomycin Susceptibility Phenotype to a Daptomycin Nonsusceptibility Phenotype Antimicrobial Agents and Chemotherapy. ,vol. 59, pp. 4226- 4238 ,(2015) , 10.1128/AAC.00160-15
Lloyd W Sumner, Alexander Amberg, Dave Barrett, Michael H Beale, Richard Beger, Clare A Daykin, Teresa W-M Fan, Oliver Fiehn, Royston Goodacre, Julian L Griffin, Thomas Hankemeier, Nigel Hardy, James Harnly, Richard Higashi, Joachim Kopka, Andrew N Lane, John C Lindon, Philip Marriott, Andrew W Nicholls, Michael D Reily, John J Thaden, Mark R Viant, et al., Proposed minimum reporting standards for chemical analysis Metabolomics. ,vol. 3, pp. 211- 221 ,(2007) , 10.1007/S11306-007-0082-2
Colin A. Smith, Elizabeth J. Want, Grace O'Maille, Ruben Abagyan, Gary Siuzdak, XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Analytical Chemistry. ,vol. 78, pp. 779- 787 ,(2006) , 10.1021/AC051437Y
Bryson D Bennett, Jie Yuan, Elizabeth H Kimball, Joshua D Rabinowitz, Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach Nature Protocols. ,vol. 3, pp. 1299- 1311 ,(2008) , 10.1038/NPROT.2008.107
Bernd Hessling, Florian Bonn, Andreas Otto, Florian-Alexander Herbst, Gerd-Martin Rappen, Jörg Bernhardt, Michael Hecker, Dörte Becher, Global proteome analysis of vancomycin stress in Staphylococcus aureus. International Journal of Medical Microbiology. ,vol. 303, pp. 624- 634 ,(2013) , 10.1016/J.IJMM.2013.08.014
Donald O. Chaffin, Destry Taylor, Shawn J. Skerrett, Craig E. Rubens, Changes in the Staphylococcus aureus Transcriptome during Early Adaptation to the Lung PLoS ONE. ,vol. 7, pp. e41329- ,(2012) , 10.1371/JOURNAL.PONE.0041329
Lucille Stuani, Christophe Lechaplais, Aaro V. Salminen, Béatrice Ségurens, Maxime Durot, Vanina Castelli, Agnès Pinet, Karine Labadie, Stéphane Cruveiller, Jean Weissenbach, Véronique de Berardinis, Marcel Salanoubat, Alain Perret, Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach Metabolomics. ,vol. 10, pp. 1223- 1238 ,(2014) , 10.1007/S11306-014-0662-X
A. Gaballa, G. L. Newton, H. Antelmann, D. Parsonage, H. Upton, M. Rawat, A. Claiborne, R. C. Fahey, J. D. Helmann, Biosynthesis and functions of bacillithiol, a major low-molecular-weight thiol in Bacilli Proceedings of the National Academy of Sciences of the United States of America. ,vol. 107, pp. 6482- 6486 ,(2010) , 10.1073/PNAS.1000928107
Christoph Wittmann, Jens O Krömer, Patrick Kiefer, Tina Binz, Elmar Heinzle, None, Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria. Analytical Biochemistry. ,vol. 327, pp. 135- 139 ,(2004) , 10.1016/J.AB.2004.01.002