SpRay: A visual analytics approach for gene expression data
作者： Janko Dietzsch , Julian Heinrich , Kay Nieselt , Dirk Bartz
DOI: 10.1109/VAST.2009.5333911
关键词: Data mining 、 Application domain 、 Electronic mail 、 Statistical analysis 、 Data visualization 、 Interactive visual analysis 、 Parallel coordinates 、 Visual analytics 、 Computer science
摘要: We present a new application, SpRay, designed for the visual exploration of gene expression data. It is based on an extension and adaption parallel coordinates to support large high-dimensional datasets. In particular, we investigate analysis data as generated by micro-array experiments; combine refined with statistical methods analytics approach that proved be particularly successful in this application domain. will demonstrate usefulness several multidimensional datasets from different bioinformatics applications.
sci-hub.se 参考文章(28)
William Ribarsky, Dong Hyun Jeong, Mark Borodovsky, Jin Hong, Chris D Shaw, Chang Song, GVis: a scalable visualization framework for genomic data ieee vgtc conference on visualization. pp. 191- 198 ,(2005) , 10.2312/VISSYM/EUROVIS05/191-198
Edward J. Wegman, Qiang Luo, High Dimensional Clustering Using Parallel Coordinates and the Grand Tour Classification and Knowledge Organization. pp. 93- 101 ,(1997) , 10.1007/978-3-642-59051-1_10
David B. Allison, Xiangqin Cui, Grier P. Page, Mahyar Sabripour, Microarray data analysis: from disarray to consolidation and consensus. Nature Reviews Genetics. ,vol. 7, pp. 55- 65 ,(2006) , 10.1038/NRG1749
David Borland, Russell M. Taylor Ii, Rainbow Color Map (Still) Considered Harmful IEEE Computer Graphics and Applications. ,vol. 27, pp. 14- 17 ,(2007) , 10.1109/MCG.2007.323435
Donna Gresh, Chris North, Theresa Marie Rhyne, Gus Calapristi, Thomas H. Dunning, Evolving visual metaphors and dynamic tools for bioinformatics visualization ieee visualization. pp. 579- 582 ,(2002) , 10.5555/602099.602206
Alfred Inselberg, The plane with parallel coordinates The Visual Computer. ,vol. 1, pp. 69- 91 ,(1985) , 10.1007/BF01898350
David R Gilbert, Michael Schroeder, Jacques van Helden, Interactive visualization and exploration of relationships between biological objects Trends in Biotechnology. ,vol. 18, pp. 487- 494 ,(2000) , 10.1016/S0167-7799(00)01510-9
Paul T Spellman, Gavin Sherlock, Michael Q Zhang, Vishwanath R Iyer, Kirk Anders, Michael B Eisen, Patrick O Brown, David Botstein, Bruce Futcher, None, Comprehensive Identification of Cell Cycle–regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization Molecular Biology of the Cell. ,vol. 9, pp. 3273- 3297 ,(1998) , 10.1091/MBC.9.12.3273
Derek Zieker, Elvira Fehrenbach, Janko Dietzsch, Judith Fliegner, Marc Waidmann, Kay Nieselt, Peter Gebicke-Haerter, Rainer Spanagel, Perikles Simon, Andreas Michael Niess, Hinnak Northoff, cDNA microarray analysis reveals novel candidate genes expressed in human peripheral blood following exhaustive exercise. Physiological Genomics. ,vol. 23, pp. 287- 294 ,(2005) , 10.1152/PHYSIOLGENOMICS.00096.2005
J. Johansson, M. Cooper, A screen space quality method for data abstraction ieee vgtc conference on visualization. ,vol. 27, pp. 1039- 1046 ,(2008) , 10.1111/J.1467-8659.2008.01240.X