Genome streamlining in a minute herbivore that manipulates its host plant

作者: Robert Greenhalgh , Wannes Dermauw , Joris J Glas , Stephane Rombauts , Nicky Wybouw

DOI: 10.7554/ELIFE.56689

关键词: Evolutionary biologyHorizontal gene transferGenomeGeneMolecular evolutionGenome sizeGenomicsBiologyAculops lycopersiciIntergenic region

摘要: The tomato russet mite, Aculops lycopersici, is among the smallest animals on earth. It a worldwide pest and can potently suppress host's natural resistance. We sequenced its genome, first of an eriophyoid, explored whether there are genomic features associated with mite's minute size lifestyle. At only 32.5 Mb, genome yet reported for any arthropod and, reminiscent microbial eukaryotes, exceptionally streamlined. has few transposable elements, tiny intergenic regions, remarkably intron-poor, as more than 80% coding genes intronless. Furthermore, in accordance ecological specialization theory, this defense-suppressing herbivore extremely reduced environmental response gene families such those involved chemoreception detoxification. Other losses associate species' highly derived body plan. Our findings accelerate understanding evolutionary forces underpinning metazoan life at limits small physical size.

参考文章(249)
G. Nuzzaci, G. Alberti, Chapter 1.2 Internal anatomy and physiology World crop pests. ,vol. 6, pp. 101- 150 ,(1996) , 10.1016/S1572-4379(96)80006-6
François Bonneton, Vincent Laudet, Evolution of Nuclear Receptors in Insects Insect Endocrinology. pp. 219- 252 ,(2012) , 10.1016/B978-0-12-384749-2.10006-8
Hartford H. Keifer, Lee R. Jeppson, Edward W. Baker, Mites injurious to economic plants Keifer, H. H. : Eriophyid Studies C-1 - C-11.. ,(1975) , 10.1525/9780520335431
T. M. Perring, C. A. Farrar, Historical perspective and current world status of the tomato russet mite (Acari: Eriophyidae). Miscellaneous Publications of the Entomological Society of America. ,vol. 63, pp. 19- ,(1986)
René Feyereisen, Insect CYP Genes and P450 Enzymes Insect Molecular Biology and Biochemistry. pp. 236- 316 ,(2012) , 10.1016/B978-0-12-384747-8.10008-X
May R. Berenbaum, Postgenomic chemical ecology: from genetic code to ecological interactions. Journal of Chemical Ecology. ,vol. 28, pp. 873- 896 ,(2002) , 10.1023/A:1015260931034
T.M. Perring, 3.2.7 Vegetables World crop pests. ,vol. 6, pp. 593- 610 ,(1996) , 10.1016/S1572-4379(96)80038-8
G.N. Oldfield, K. Michalska, 1.4.2 Spermatophore deposition, mating behavior and population mating structure World crop pests. ,vol. 6, pp. 185- 198 ,(1996) , 10.1016/S1572-4379(96)80010-8
M.W. Sabelis, J. Bruin, Evolutionary ecology: life history patterns, food plant choice and dispersal World crop pests. ,vol. 6, pp. 329- 366 ,(1996) , 10.1016/S1572-4379(96)80020-0
Thomas Schiex, Annick Moisan, Pierre Rouzé, Eugène: An Eukaryotic Gene Finder That Combines Several Sources of Evidence Computational Biology. ,vol. 2066, pp. 111- 125 ,(2001) , 10.1007/3-540-45727-5_10