Propidium monoazide (PMA) and ethidium bromide monoazide (EMA) improve DNA array and high-throughput sequencing of porcine reproductive and respiratory syndrome virus identification.

作者: Christian Bellehumeur , Brian Boyle , Steve J. Charette , Josée Harel , Yvan L’Homme

DOI: 10.1016/J.JVIROMET.2015.06.014

关键词: Respiratory virusPorcine reproductive and respiratory syndrome virusNucleic acidBiologyPropidium monoazideEnzymeRNAEthidium bromideReverse transcription polymerase chain reactionMolecular biologyMicrobiology

摘要: Pan-viral DNA array (PVDA) and high-throughput sequencing (HTS) are useful tools to identify novel viruses of emerging diseases. However, both techniques have difficulties to identify …

参考文章(35)
D. Wang, L. Coscoy, M. Zylberberg, P. C. Avila, H. A. Boushey, D. Ganem, J. L. DeRisi, Microarray-based detection and genotyping of viral pathogens Proceedings of the National Academy of Sciences of the United States of America. ,vol. 99, pp. 15687- 15692 ,(2002) , 10.1073/PNAS.242579699
Christian Bellehumeur, Carl A. Gagnon, Brian Boyle, Isabel Mandeville, High-throughput sequencing revealed the presence of an unforeseen parvovirus species in Canadian swine: the porcine partetravirus. Canadian Veterinary Journal-revue Veterinaire Canadienne. ,vol. 54, pp. 787- 789 ,(2013)
Eunice C. Chen, Steve A. Miller, Joseph L. DeRisi, Charles Y. Chiu, Using a Pan-Viral Microarray Assay (Virochip) to Screen Clinical Samples for Viral Pathogens Journal of Visualized Experiments. pp. 167- 174 ,(2011) , 10.3791/2536
Richard J. Hall, Jing Wang, Angela K. Todd, Ange B. Bissielo, Seiha Yen, Hugo Strydom, Nicole E. Moore, Xiaoyun Ren, Q. Sue Huang, Philip E. Carter, Matthew Peacey, Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery. Journal of Virological Methods. ,vol. 195, pp. 194- 204 ,(2014) , 10.1016/J.JVIROMET.2013.08.035
Joseph G. Victoria, Amit Kapoor, Kent Dupuis, David P. Schnurr, Eric L. Delwart, Rapid identification of known and new RNA viruses from animal tissues. PLOS Pathogens. ,vol. 4, ,(2008) , 10.1371/JOURNAL.PPAT.1000163
Andreas Nocker, Ching-Ying Cheung, Anne K. Camper, Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells Journal of Microbiological Methods. ,vol. 67, pp. 310- 320 ,(2006) , 10.1016/J.MIMET.2006.04.015
Walter Ian Lipkin, Cadhla Firth, Viral surveillance and discovery Current Opinion in Virology. ,vol. 3, pp. 199- 204 ,(2013) , 10.1016/J.COVIRO.2013.03.010
Nathan L. Yozwiak, Peter Skewes-Cox, Mark D. Stenglein, Angel Balmaseda, Eva Harris, Joseph L. DeRisi, Virus identification in unknown tropical febrile illness cases using deep sequencing. PLOS Neglected Tropical Diseases. ,vol. 6, ,(2012) , 10.1371/JOURNAL.PNTD.0001485
P. Elizaquível, R. Aznar, G. Sánchez, Recent developments in the use of viability dyes and quantitative PCR in the food microbiology field Journal of Applied Microbiology. ,vol. 116, pp. 1- 13 ,(2014) , 10.1111/JAM.12365