Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

作者: Sergei A Filichkin , Todd C Mockler

DOI: 10.1186/1745-6150-7-20

关键词: RNA-SeqRNA splicingAlternative splicingExonGeneGene expression profilingIntronBiologyCircadian clockGenetics

摘要: … Pre-mRNAs of the CCA1/LHY-like subfamily of MYB … belong to a CCA1/LHY-like subfamily of MYB transcription factors [6]… of the core clock CCA1/LHY-like subfamily of MYB transcription …

参考文章(29)
Saiprasad GOUD PALUSA, Gul SHAD ALI, Anireddy SN REDDY, None, Alternative splicing of pre‐mRNAs of Arabidopsis serine/arginine‐rich proteins: regulation by hormones and stresses Plant Journal. ,vol. 49, pp. 1091- 1107 ,(2007) , 10.1111/J.1365-313X.2006.03020.X
A. Mayeda, S.H. Munroe, J.F. Cáceres, A.R. Krainer, Function of conserved domains of hnRNP A1 and other hnRNP A/B proteins. The EMBO Journal. ,vol. 13, pp. 5483- 5495 ,(1994) , 10.1002/J.1460-2075.1994.TB06883.X
Jianqiang Wu, Jin-Ho Kang, Christian Hettenhausen, Ian T. Baldwin, Nonsense-mediated mRNA decay (NMD) silences the accumulation of aberrant trypsin proteinase inhibitor mRNA in Nicotiana attenuata The Plant Journal. ,vol. 51, pp. 693- 706 ,(2007) , 10.1111/J.1365-313X.2007.03173.X
Tsuyoshi Mizoguchi, Kay Wheatley, Yoshie Hanzawa, Louisa Wright, Mutsuko Mizoguchi, Hae-Ryong Song, Isabelle A. Carré, George Coupland, LHY and CCA1 Are Partially Redundant Genes Required to Maintain Circadian Rhythms in Arabidopsis Developmental Cell. ,vol. 2, pp. 629- 641 ,(2002) , 10.1016/S1534-5807(02)00170-3
Steven E. Brenner, Liana F. Lareau, Maki Inada, Richard E. Green, Jordan C. Wengrod, Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements Nature. ,vol. 446, pp. 926- 929 ,(2007) , 10.1038/NATURE05676
B.-B. Wang, V. Brendel, Genomewide comparative analysis of alternative splicing in plants Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 7175- 7180 ,(2006) , 10.1073/PNAS.0602039103
Jan Rehwinkel, Jeroen Raes, Elisa Izaurralde, Nonsense-mediated mRNA decay: target genes and functional diversification of effectors Trends in Biochemical Sciences. ,vol. 31, pp. 639- 646 ,(2006) , 10.1016/J.TIBS.2006.09.005
Sergei A. Filichkin, Ghislain Breton, Henry D. Priest, Palitha Dharmawardhana, Pankaj Jaiswal, Samuel E. Fox, Todd P. Michael, Joanne Chory, Steve A. Kay, Todd C. Mockler, Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules PLoS ONE. ,vol. 6, pp. e16907- ,(2011) , 10.1371/JOURNAL.PONE.0016907
Zheng Qing Fu, Ming Guo, Byeong-ryool Jeong, Fang Tian, Thomas E. Elthon, Ronald L. Cerny, Dorothee Staiger, James R. Alfano, A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity Nature. ,vol. 447, pp. 284- 288 ,(2007) , 10.1038/NATURE05737
Jose L. Pruneda-Paz, Steve A. Kay, An expanding universe of circadian networks in higher plants Trends in Plant Science. ,vol. 15, pp. 259- 265 ,(2010) , 10.1016/J.TPLANTS.2010.03.003