Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota
作者： Didier Raoult , Fadi Bittar , Ibrahim Hamad , Stéphane Ranque , Esam I. Azhar
DOI: 10.1038/S41598-017-17132-4
关键词: Feces 、 Ascomycota 、 Culturomics 、 Biology 、 Amplicon 、 Isolation (microbiology) 、 Microbiology 、 Deep sequencing 、 Metagenomics 、 Mycobiota
摘要: … Chao-1 estimator and Shannon diversity indices to estimate the diversity of fungal communities in the different fecal samples (Supplementary Table 5). The highest Chao… highest Chao-1 …
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Doudou Sow, Bécaye Fall, Magatte Ndiaye, Bissoume Sambe Ba, Khadime Sylla, Roger Tine, Aminata Collé Lô, Annie Abiola, Boubacar Wade, Thérèse Dieng, Yémou Dieng, Jean Louis Ndiaye, Christophe Hennequin, Oumar Gaye, Babacar Faye, None, Usefulness of MALDI-TOF Mass Spectrometry for Routine Identification of Candida Species in a Resource-Poor Setting. Mycopathologia. ,vol. 180, pp. 173- 179 ,(2015) , 10.1007/S11046-015-9905-2
Anastasis Oulas, Christina Pavloudi, Paraskevi Polymenakou, Georgios A. Pavlopoulos, Nikolas Papanikolaou, Georgios Kotoulas, Christos Arvanitidis, loannis Iliopoulos, Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies Bioinformatics and Biology Insights. ,vol. 9, pp. 75- 88 ,(2015) , 10.4137/BBI.S12462
J.-C. Lagier, F. Armougom, M. Million, P. Hugon, I. Pagnier, C. Robert, F. Bittar, G. Fournous, G. Gimenez, M. Maraninchi, J.-F. Trape, E.V. Koonin, B. La Scola, D. Raoult, Microbial culturomics: paradigm shift in the human gut microbiome study Clinical Microbiology and Infection. ,vol. 18, pp. 1185- 1193 ,(2012) , 10.1111/1469-0691.12023
O. Bader, M. Weig, L. Taverne-Ghadwal, R. Lugert, U. Groß, M. Kuhns, Improved clinical laboratory identification of human pathogenic yeasts by matrix-assisted laser desorption ionization time-of-flight mass spectrometry Clinical Microbiology and Infection. ,vol. 17, pp. 1359- 1365 ,(2011) , 10.1111/J.1469-0691.2010.03398.X
I. Hamad, D. Raoult, F. Bittar, Repertory of eukaryotes (eukaryome) in the human gastrointestinal tract: taxonomy and detection methods. Parasite Immunology. ,vol. 38, pp. 12- 36 ,(2016) , 10.1111/PIM.12284
Manuel Portero Otín, Reinald Pamplona Gras, Mariona Jové Font, M Rodríguez, Daniel Pérez, Felipe Javier Chaves, Eduardo Esteve, Pablo Marin-Garcia, Gemma Xifra, Joan Vendrell, Wifredo Ricart, Matilde R Chacón, José Manuel Fernández Real, None, Obesity changes the human gut mycobiome. Scientific Reports. ,vol. 5, pp. 14600- 14600 ,(2015) , 10.1038/SREP14600
Miklós Bálint, Philipp‐André Schmidt, Rahul Sharma, Marco Thines, Imke Schmitt, An Illumina metabarcoding pipeline for fungi Ecology and Evolution. ,vol. 4, pp. 2642- 2653 ,(2014) , 10.1002/ECE3.1107
Nina Gouba, Didier Raoult, Michel Drancourt, Gut microeukaryotes during anorexia nervosa: a case report BMC Research Notes. ,vol. 7, pp. 33- 33 ,(2014) , 10.1186/1756-0500-7-33
N. Gouba, M. Drancourt, Digestive tract mycobiota: A source of infection Medecine Et Maladies Infectieuses. ,vol. 45, pp. 9- 16 ,(2015) , 10.1016/J.MEDMAL.2015.01.007
Nina Gouba, Didier Raoult, Michel Drancourt, Plant and Fungal Diversity in Gut Microbiota as Revealed by Molecular and Culture Investigations PLOS ONE. ,vol. 8, ,(2013) , 10.1371/JOURNAL.PONE.0059474