Mechanisms for recurrent and complex human genomic rearrangements.

作者: Pengfei Liu , Claudia MB Carvalho , PJ Hastings , James R Lupski

DOI: 10.1016/J.GDE.2012.02.012

关键词: GenomeBiologyModel organismChromothripsisEvolutionary biologyHuman geneticsGene rearrangementCopy-number variationHuman genomeNon-allelic homologous recombinationGenetics

摘要: During the last two decades, importance of human genome copy number variation (CNV) in disease has become widely recognized. However, much is not understood about underlying mechanisms. We show how, although model organism research guides molecular understanding, important insights are gained from study wealth information available clinic. describe progress explaining nonallelic homologous recombination (NAHR), a major cause change occurring when control allelic fails, highlight growing replicative mechanisms to explain complex events, and understanding extreme chromosome reorganization (chromothripsis). Both nonhomologous end-joining aberrant replication have significant roles chromothripsis. As we CNV, processes evolution revealed.

参考文章(76)
Claudia M.B. Carvalho, Feng Zhang, Pengfei Liu, Ankita Patel, Trilochan Sahoo, Carlos A. Bacino, Chad Shaw, Sandra Peacock, Amber Pursley, Y. Jane Tavyev, Melissa B. Ramocki, Magdalena Nawara, Ewa Obersztyn, Angela M. Vianna-Morgante, Pawel Stankiewicz, Huda Y. Zoghbi, Sau Wai Cheung, James R. Lupski, Complex rearrangements in patients with duplications of MECP2 can occur by fork stalling and template switching Human Molecular Genetics. ,vol. 18, pp. 2188- 2203 ,(2009) , 10.1093/HMG/DDP151
Philip J. Stephens, David J. McBride, Meng-Lay Lin, Ignacio Varela, Erin D. Pleasance, Jared T. Simpson, Lucy A. Stebbings, Catherine Leroy, Sarah Edkins, Laura J. Mudie, Chris D. Greenman, Mingming Jia, Calli Latimer, Jon W. Teague, King Wai Lau, John Burton, Michael A. Quail, Harold Swerdlow, Carol Churcher, Rachael Natrajan, Anieta M. Sieuwerts, John W. M. Martens, Daniel P. Silver, Anita Langerød, Hege E. G. Russnes, John A. Foekens, Jorge S. Reis-Filho, Laura van ’t Veer, Andrea L. Richardson, Anne-Lise Børresen-Dale, Peter J. Campbell, P. Andrew Futreal, Michael R. Stratton, Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature. ,vol. 462, pp. 1005- 1010 ,(2009) , 10.1038/NATURE08645
Geoff Fudenberg, Gad Getz, Matthew Meyerson, Leonid A Mirny, High order chromatin architecture shapes the landscape of chromosomal alterations in cancer. Nature Biotechnology. ,vol. 29, pp. 1109- 1113 ,(2011) , 10.1038/NBT.2049
I. L. Berg, R. Neumann, S. Sarbajna, L. Odenthal-Hesse, N. J. Butler, A. J. Jeffreys, Variants of the protein PRDM9 differentially regulate a set of human meiotic recombination hotspots highly active in African populations Proceedings of the National Academy of Sciences of the United States of America. ,vol. 108, pp. 12378- 12383 ,(2011) , 10.1073/PNAS.1109531108
Isabelle Koscinski, Elias ElInati, Camille Fossard, Claire Redin, Jean Muller, Juan Velez de la Calle, Françoise Schmitt, Mariem Ben Khelifa, Pierre Ray, Zaid Kilani, Christopher LR Barratt, Stéphane Viville, None, DPY19L2 deletion as a major cause of globozoospermia. American Journal of Human Genetics. ,vol. 88, pp. 344- 350 ,(2011) , 10.1016/J.AJHG.2011.01.018
Jennifer A. Lee, Claudia M.B. Carvalho, James R. Lupski, A DNA Replication Mechanism for Generating Nonrecurrent Rearrangements Associated with Genomic Disorders Cell. ,vol. 131, pp. 1235- 1247 ,(2007) , 10.1016/J.CELL.2007.11.037
Martin F. Arlt, Jennifer G. Mulle, Valerie M. Schaibley, Ryan L. Ragland, Sandra G. Durkin, Stephen T. Warren, Thomas W. Glover, Replication Stress Induces Genome-Wide Copy Number Changes in Human Cells That Resemble Polymorphic and Pathogenic Variants American Journal of Human Genetics. ,vol. 84, pp. 339- 350 ,(2009) , 10.1016/J.AJHG.2009.01.024
Z. Ou, P. Stankiewicz, Z. Xia, A. M. Breman, B. Dawson, J. Wiszniewska, P. Szafranski, M. L. Cooper, M. Rao, L. Shao, S. T. South, K. Coleman, P. M. Fernhoff, M. J. Deray, S. Rosengren, E. R. Roeder, V. B. Enciso, A. C. Chinault, A. Patel, S.-H. L. Kang, C. A. Shaw, J. R. Lupski, S. W. Cheung, Observation and prediction of recurrent human translocations mediated by NAHR between nonhomologous chromosomes Genome Research. ,vol. 21, pp. 33- 46 ,(2011) , 10.1101/GR.111609.110
Richard Redon, Shumpei Ishikawa, Karen R. Fitch, Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun Kyung Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. González, Mònica Gratacòs, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles, Global variation in copy number in the human genome Nature. ,vol. 444, pp. 444- 454 ,(2006) , 10.1038/NATURE05329
Weimin Bi, Tamar Sapir, Oleg A Shchelochkov, Feng Zhang, Marjorie A Withers, Jill V Hunter, Talia Levy, Vera Shinder, Daniel A Peiffer, Kevin L Gunderson, Marjan M Nezarati, Vern Ann Shotts, Stephen S Amato, Sarah K Savage, David J Harris, Debra-Lynn Day-Salvatore, Michele Horner, Xin-Yan Lu, Trilochan Sahoo, Yuchio Yanagawa, Arthur L Beaudet, Sau Wai Cheung, Salvador Martinez, James R Lupski, Orly Reiner, Increased LIS1 expression affects human and mouse brain development Nature Genetics. ,vol. 41, pp. 168- 177 ,(2009) , 10.1038/NG.302