Algorithms for constructing more accurate and inclusive phylogenetic trees

作者: Ruchi Chaudhary

DOI: 10.31274/ETD-180810-3517

关键词: Theoretical computer scienceMathematicsPhylogenetic tree

摘要:

参考文章(91)
Paweł Górecki, J. Gordon Burleigh, Oliver Eulenstein, GTP supertrees from unrooted gene trees: linear time algorithms for NNI based local searches international symposium on bioinformatics research and applications. pp. 102- 114 ,(2012) , 10.1007/978-3-642-30191-9_11
F. R. McMorris, Michael A. Steel, The complexity of the median procedure for binary trees New Approaches in Classification and Data Analysis. pp. 136- 140 ,(1994) , 10.1007/978-3-642-51175-2_14
André Wehe, John Gordon Burleigh, H AlMubaid, Scaling the Gene Duplication Problem Towards the Tree of Life. BICoB. pp. 133- 138 ,(2010)
Glenn Hickey, Frank Dehne, Andrew Rau-Chaplin, Christian Blouin, SPR Distance Computation for Unrooted Trees Evolutionary Bioinformatics. ,vol. 4, pp. 17- 27 ,(2008) , 10.4137/EBO.S419
Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy Warnow, Better hill-climbing searches for parsimony workshop on algorithms in bioinformatics. ,vol. 2812, pp. 245- 258 ,(2003) , 10.1007/978-3-540-39763-2_19
Tandy Warnow, Ganeshkumar Ganapathysaravanabavan, Vijaya Ramachandran, Algorithms and heuristics for combinatorial optimization in phylogeny University of Texas at Austin. ,(2006)
Cuong V. Than, Noah A. Rosenberg, Consistency properties of species tree inference by minimizing deep coalescences. Journal of Computational Biology. ,vol. 18, pp. 1- 15 ,(2011) , 10.1089/CMB.2010.0102
J. Gordon Burleigh, Mukul S. Bansal, Oliver Eulenstein, Stefanie Hartmann, André Wehe, Todd J. Vision, Genome-Scale Phylogenetics: Inferring the Plant Tree of Life from 18,896 Gene Trees Systematic Biology. ,vol. 60, pp. 117- 125 ,(2011) , 10.1093/SYSBIO/SYQ072
ANDREW B. SMITH, Rooting molecular trees: problems and strategies Biological Journal of The Linnean Society. ,vol. 51, pp. 279- 292 ,(1994) , 10.1111/J.1095-8312.1994.TB00962.X
LOUXIN ZHANG, On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies. Journal of Computational Biology. ,vol. 4, pp. 177- 187 ,(1997) , 10.1089/CMB.1997.4.177