Surveillance and Cleavage of Eukaryotic tRNAs

作者: Cyrille Megel , Geoffrey Morelle , Stéphanie Lalande , Anne-Marie Duchêne , Ian Small

DOI: 10.3390/IJMS16011873

关键词: Protein biosynthesisGeneticsRegulation of gene expressionBiogenesisBiologyRNA StabilityRibosomal RNATransfer RNACleavage (embryo)Exoribonucleases

摘要: Beyond their central role in protein synthesis, transfer RNAs (tRNAs) have many other crucial functions. This includes various roles the regulation of gene expression, stress responses, metabolic processes and priming reverse transcription. In RNA world, tRNAs are, with ribosomal RNAs, among most stable molecules. Nevertheless, they are not eternal. As key elements cell function, need to be continuously quality-controlled. Two tRNA surveillance pathways been identified. They act on hypo-modified or mis-processed pre-tRNAs mature lacking modifications. A short overview these two will presented here. Furthermore, while exoribonucleases acting ultimately lead complete degradation, numerous tRNA-derived fragments (tRFs) present within a cell. These cleavage products now potentially emerge as new class small non-coding (sncRNAs) suspected important regulatory The tRFs evolutionarily widespread created by at different positions endonucleases. Here, we review our knowledge biogenesis function organisms.

参考文章(111)
Charles Boone, Renee L. Brost, Xuying Wang, James T. Anderson, Michael Costanzo, Sarah G. Ozanick, Rex1p Deficiency Leads to Accumulation of Precursor Initiator tRNA Met and Polyadenylation of Substrate RNAs in Saccharomyces cerevisiae Nucleid Acids Research. ,(2009)
Huan Wang, Xiuren Zhang, Jun Liu, Takatoshi Kiba, Jongchan Woo, Tolulope Ojo, Markus Hafner, Thomas Tuschl, Nam‐Hai Chua, Xiu‐Jie Wang, Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions Plant Journal. ,vol. 67, pp. 292- 304 ,(2011) , 10.1111/J.1365-313X.2011.04594.X
M. David, G. D. Borasio, G. Kaufmann, Bacteriophage T4-induced anticodon-loop nuclease detected in a host strain restrictive to RNA ligase mutants. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 79, pp. 7097- 7101 ,(1982) , 10.1073/PNAS.79.23.7097
Martyna Nowacka, Pawel M. Strozycki, Paulina Jackowiak, Anna Hojka-Osinska, Maciej Szymanski, Marek Figlerowicz, Identification of stable, high copy number, medium-sized RNA degradation intermediates that accumulate in plants under non-stress conditions. Plant Molecular Biology. ,vol. 83, pp. 191- 204 ,(2013) , 10.1007/S11103-013-0079-3
Iwona Karkusiewicz, Tomasz W. Turowski, Damian Graczyk, Joanna Towpik, Nripesh Dhungel, Anita K. Hopper, Magdalena Boguta, Maf1 Protein, Repressor of RNA Polymerase III, Indirectly Affects tRNA Processing Journal of Biological Chemistry. ,vol. 286, pp. 39478- 39488 ,(2011) , 10.1074/JBC.M111.253310
J. Anderson, L. Phan, A. G. Hinnebusch, The Gcd10p/Gcd14p complex is the essential two-subunit tRNA(1-methyladenosine) methyltransferase of Saccharomyces cerevisiae Proceedings of the National Academy of Sciences of the United States of America. ,vol. 97, pp. 5173- 5178 ,(2000) , 10.1073/PNAS.090102597
Medha Raina, Michael Ibba, tRNAs as regulators of biological processes Frontiers in Genetics. ,vol. 5, pp. 171- 171 ,(2014) , 10.3389/FGENE.2014.00171
Y XIONG, T STEITZ, A story with a good ending: tRNA 3'-end maturation by CCA-adding enzymes. Current Opinion in Structural Biology. ,vol. 16, pp. 12- 17 ,(2006) , 10.1016/J.SBI.2005.12.001
Larissa Reifur, Maria Rosa Garcia-Silva, Saloê Bispo Poubel, Lysangela Ronalte Alves, Paulo Arauco, Diane Kelly Buiar, Samuel Goldenberg, Alfonso Cayota, Bruno Dallagiovanna, Distinct subcellular localization of tRNA-derived fragments in the infective metacyclic forms of Trypanosoma cruzi Memorias Do Instituto Oswaldo Cruz. ,vol. 107, pp. 816- 819 ,(2012) , 10.1590/S0074-02762012000600018
Kazunori Watanabe, Ryu Miyagawa, Chie Tomikawa, Rie Mizuno, Akihisa Takahashi, Hiroyuki Hori, Kenichi Ijiri, Degradation of initiator tRNAMet by Xrn1/2 via its accumulation in the nucleus of heat-treated HeLa cells Nucleic Acids Research. ,vol. 41, pp. 4671- 4685 ,(2013) , 10.1093/NAR/GKT153