A manual and an automatic TERS based virus discrimination

作者: Konstanze Olschewski , Evelyn Kämmer , Stephan Stöckel , Thomas Bocklitz , Tanja Deckert-Gaudig

DOI: 10.1039/C4NR07033J

关键词: Visual discriminationVirologyPorcine teschovirusVirus identificationPattern recognitionVirus detectionSpectral dataBiologyVirusArtificial intelligenceQuality ratingChemometrics

摘要: Rapid techniques for virus identification are more relevant today than ever. Conventional detection and strategies generally rest upon various microbiological methods genomic approaches, which not suited the analysis of single particles. In contrast, highly sensitive spectroscopic technique tip-enhanced Raman spectroscopy (TERS) allows characterisation biological nano-structures like virions on a single-particle level. this study, feasibility TERS in combination with chemometrics to discriminate two pathogenic viruses, Varicella-zoster (VZV) Porcine teschovirus (PTV), was investigated. first step, chemometric transformed spectral data such way that rapid visual discrimination examined viruses enabled. further these were utilised perform an automatic quality rating measured spectra. Spectra passed test eventually used calculate classification model, through successful viral species based spectra particles also realised accuracy 91%.

参考文章(39)
W. N. Venables, B. D. Ripley, Modern Applied Statistics with S Springer. ,(2010) , 10.1007/978-0-387-21706-2
Richard L. Hodinka, Richard L. Hodinka, Laurent Kaiser, Peter Gilligan, Laurent Kaiser, Point-Counterpoint: Is the Era of Viral Culture Over in the Clinical Microbiology Laboratory? Journal of Clinical Microbiology. ,vol. 51, pp. 2- 8 ,(2013) , 10.1128/JCM.02593-12
Dana Cialla, Tanja Deckert-Gaudig, Christian Budich, Michael Laue, Robert Möller, Dieter Naumann, Volker Deckert, Jürgen Popp, Raman to the limit: tip‐enhanced Raman spectroscopic investigations of a single tobacco mosaic virus Journal of Raman Spectroscopy. ,vol. 40, pp. 240- 243 ,(2009) , 10.1002/JRS.2123
Peter Hermann, Antje Hermelink, Veronika Lausch, Gudrun Holland, Lars Möller, Norbert Bannert, Dieter Naumann, Evaluation of tip-enhanced Raman spectroscopy for characterizing different virus strains Analyst. ,vol. 136, pp. 1148- 1152 ,(2011) , 10.1039/C0AN00531B
S Stewart, P.M Fredericks, Surface-enhanced Raman spectroscopy of amino acids adsorbed on an electrochemically prepared silver surface Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. ,vol. 55, pp. 1641- 1660 ,(1999) , 10.1016/S1386-1425(98)00294-7
Marc Lecuit, Marc Eloit, The human virome: new tools and concepts Trends in Microbiology. ,vol. 21, pp. 510- 515 ,(2013) , 10.1016/J.TIM.2013.07.001
A. Brambilla, A. Philippidis, A. Nevin, D. Comelli, G. Valentini, D. Anglos, Adapting and testing a portable Raman spectrometer for SERS analysis of amino acids and small peptides Journal of Molecular Structure. ,vol. 1044, pp. 121- 127 ,(2013) , 10.1016/J.MOLSTRUC.2012.12.060