Dissecting Epistatic QTL for Blood Pressure in Rats: Congenic Strains versus Heterogeneous Stocks, a Reality Check.

作者: John P. Rapp , Bina Joe

DOI: 10.1002/CPHY.C180038

关键词: Genetic markerMolecular geneticsComputational biologyBiologyEpistasisQuantitative trait locusModel organismCongenicGenomeGenetic architecture

摘要: Advances in molecular genetics have provided well-defined physical genetic maps and large numbers of markers for both model organisms humans. It is now possible to gain a fundamental understanding the architecture underlying quantitative traits, which blood pressure (BP) an important example. This review emphasizes analytical techniques results obtained using Dahl salt-sensitive (S) rat as hypertension by presenting detail three specific chromosomal regions harboring elements increasing complexity controlling BP. These highlight critical importance interactions (epistasis) on BP at all levels structure, intragenic, intergenic, intrachromosomal, interchromosomal, across whole genomes. In two examples presented, DNA structural variations leading biochemical, physiological, pathological mechanisms are well defined. proves usefulness involving interval mapping followed substitution congenic strains. classic compared newer approaches sophisticated statistical analysis various segregating or outbred model-organism populations, some cases uniquely useful demonstrating existence higher-order interactions. speculated that outlier phenotype dependent The obstacle identification biochemical/physiological involved not theoretical technical but lack future resources finish job identifying individual trait loci ascertaining their functions. © 2019 American Physiological Society. Compr Physiol 9:1305-1337, 2019.

参考文章(126)
Michal Pravenec, Pavel Kl??r, Vladimir K??en, Josef Zicha, Jaroslav Kune??, An analysis of spontaneous hypertension in spontaneously hypertensive rats by means of new recombinant inbred strains. Journal of Hypertension. ,vol. 7, pp. 217- 221 ,(1989) , 10.1097/00004872-198903000-00008
Lars M. Steinmetz, Himanshu Sinha, Dan R. Richards, Jamie I. Spiegelman, Peter J. Oefner, John H. McCusker, Ronald W. Davis, Dissecting the architecture of a quantitative trait locus in yeast Nature. ,vol. 416, pp. 326- 330 ,(2002) , 10.1038/416326A
Kamille Smidt, Niels Jessen, Andreas Brønden Petersen, Agnete Larsen, Nils Magnusson, Johanne Bruun Jeppesen, Meredin Stoltenberg, Janetta G. Culvenor, Andrew Tsatsanis, Birgitte Brock, Ole Schmitz, Lise Wogensen, Ashley I. Bush, Jørgen Rungby, SLC30A3 Responds to Glucose- and Zinc Variations in ß-Cells and Is Critical for Insulin Production and In Vivo Glucose-Metabolism During ß-Cell Stress PLoS ONE. ,vol. 4, pp. e5684- ,(2009) , 10.1371/JOURNAL.PONE.0005684
Jeremy Sabourin, Andrew B. Nobel, William Valdar, Fine-mapping additive and dominant SNP effects using group-LASSO and fractional resample model averaging. Genetic Epidemiology. ,vol. 39, pp. 77- 88 ,(2015) , 10.1002/GEPI.21869
Julie Dutil, Vasiliki Eliopoulos, Johanne Tremblay, Pavel Hamet, Sophie Charron, Alan Y. Deng, Multiple Quantitative Trait Loci for Blood Pressure Interacting Epistatically and Additively on Dahl Rat Chromosome 2 Hypertension. ,vol. 45, pp. 557- 564 ,(2005) , 10.1161/01.HYP.0000158841.71658.5E
Edward Wakeland, Laurence Morel, Karen Achey, Mary Yui, Jeff Longmate, Speed congenics: a classic technique in the fast lane (relatively speaking). Immunology Today. ,vol. 18, pp. 472- 477 ,(1997) , 10.1016/S0167-5699(97)01126-2
Nicola J. Armstrong, Thomas C. Brodnicki, Terence P. Speed, Mind the gap: analysis of marker-assisted breeding strategies for inbred mouse strains Mammalian Genome. ,vol. 17, pp. 273- 287 ,(2006) , 10.1007/S00335-005-0123-Y
Sivarajan Kumarasamy, Kathirvel Gopalakrishnan, Edward J Toland, Shane Yerga-Woolwine, Phyllis Farms, Eric E Morgan, Bina Joe, Refined mapping of blood pressure quantitative trait loci using congenic strains developed from two genetically hypertensive rat models Hypertension Research. ,vol. 34, pp. 1263- 1270 ,(2011) , 10.1038/HR.2011.116
Oksana I. Dukhanina, Theodore W. Kurtz, Roxanne Walder, Michael R. Garrett, Howard Dene, John P. Rapp, George T. Cicila, Blood pressure and survival of a Chromosome 7 congenic strain bred from Dahl rats Mammalian Genome. ,vol. 8, pp. 896- 902 ,(1997) , 10.1007/S003359900607