MultiDimensional ClinOmics for Precision Therapy of Children and Adolescent Young Adults with Relapsed and Refractory Cancer: A Report from the Center for Cancer Research.

作者: Wendy Chang , Andrew S Brohl , Rajesh Patidar , Sivasish Sindiri , Jack F Shern

DOI: 10.1158/1078-0432.CCR-15-2717

关键词: MedicineOncologyChemotherapyClinical trialYoung adultDrug resistanceExome sequencingPrecision medicineGermline mutationInternal medicineBioinformaticsGermline

摘要: Purpose: We undertook a multidimensional clinical genomics study of children and adolescent young adults with relapsed refractory cancers to determine the feasibility genome-guided precision therapy. Experimental Design: Patients non-central nervous system solid tumors underwent combination whole exome sequencing (WES), transcriptome (WTS), high-density single-nucleotide polymorphism array analysis tumor, WES matched germline DNA. Clinically actionable alterations were identified as reportable mutation, diagnosis change, or somatic event (including single nucleotide variant, an indel, amplification, deletion, fusion gene), which could be targeted drugs in existing trials FDA-approved drugs. Results: Fifty-nine patients 20 diagnostic categories enrolled from 2010 2014. Ages ranged 7 months 25 years old. Seventy-three percent had prior chemotherapy, these higher mutational burden than that reported literature. Thirty (51% total) clinically mutations, 24 (41%) mutation was currently targetable trial setting, 4 (7%) change diagnosis, (12%) mutation. Conclusions: found remarkably high number mutations 51% patients, 12% significant mutations. demonstrated next-generation diverse population pediatric tumors. Clin Cancer Res; 22(15); 3810–20. ©2016 AACR.

参考文章(48)
Javed Khan, Jun S Wei, Markus Ringner, Lao H Saal, Marc Ladanyi, Frank Westermann, Frank Berthold, Manfred Schwab, Cristina R Antonescu, Carsten Peterson, Paul S Meltzer, None, Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks Nature Medicine. ,vol. 7, pp. 673- 679 ,(2001) , 10.1038/89044
E H Soule, A B Hamoudi, H M Reiman, H Shimada, M Beltangady, H Maurer, W A Newton, Histopathology of childhood sarcomas, Intergroup Rhabdomyosarcoma Studies I and II: clinicopathologic correlation. Journal of Clinical Oncology. ,vol. 6, pp. 67- 75 ,(1988) , 10.1200/JCO.1988.6.1.67
Richard D. Williams, Tasnim Chagtai, Marisa Alcaide-German, John Apps, Jenny Wegert, Sergey Popov, Gordan Vujanic, Harm van Tinteren, Marry M. van den Heuvel-Eibrink, Marcel Kool, Jan de Kraker, David Gisselsson, Norbert Graf, Manfred Gessler, Kathy Pritchard-Jones, Multiple mechanisms of MYCN dysregulation in Wilms tumour Oncotarget. ,vol. 6, pp. 7232- 7243 ,(2015) , 10.18632/ONCOTARGET.3377
Rajen J Mody, Yi-Mi Wu, Robert J Lonigro, Xuhong Cao, Sameek Roychowdhury, Pankaj Vats, Kevin M Frank, John R Prensner, Irfan Asangani, Nallasivam Palanisamy, Jonathan R Dillman, Raja M Rabah, Laxmi Priya Kunju, Jessica Everett, Victoria M Raymond, Yu Ning, Fengyun Su, Rui Wang, Elena M Stoffel, Jeffrey W Innis, J Scott Roberts, Patricia L Robertson, Gregory Yanik, Aghiad Chamdin, James A Connelly, Sung Choi, Andrew C Harris, Carrie Kitko, Rama Jasty Rao, John E Levine, Valerie P Castle, Raymond J Hutchinson, Moshe Talpaz, Dan R Robinson, Arul M Chinnaiyan, None, Integrative Clinical Sequencing in the Management of Refractory or Relapsed Cancer in Youth JAMA. ,vol. 314, pp. 913- 925 ,(2015) , 10.1001/JAMA.2015.10080
J F McIntyre, B Smith-Sorensen, S H Friend, J Kassell, A L Borresen, Y X Yan, C Russo, J Sato, N Barbier, J Miser, Germline mutations of the p53 tumor suppressor gene in children with osteosarcoma. Journal of Clinical Oncology. ,vol. 12, pp. 925- 930 ,(1994) , 10.1200/JCO.1994.12.5.925
Richard J. Young, Kelly Waldeck, Claire Martin, Jung H. Foo, Donald P. Cameron, Laura Kirby, Hongdo Do, Catherine Mitchell, Carleen Cullinane, Wendy Liu, Stephen B. Fox, Ken Dutton-Regester, Nicholas K. Hayward, Nicholas Jene, Alexander Dobrovic, Richard B. Pearson, James G. Christensen, Sophia Randolph, Grant A. McArthur, Karen E. Sheppard, Loss of CDKN2A expression is a frequent event in primary invasive melanoma and correlates with sensitivity to the CDK4/6 inhibitor PD0332991 in melanoma cell lines. Pigment Cell & Melanoma Research. ,vol. 27, pp. 590- 600 ,(2014) , 10.1111/PCMR.12228
Franck Tirode, Didier Surdez, Xiaotu Ma, Matthew Parker, Marie Cécile Le Deley, Armita Bahrami, Zhaojie Zhang, Eve Lapouble, Sandrine Grossetête-Lalami, Michael Rusch, Stéphanie Reynaud, Thomas Rio-Frio, Erin Hedlund, Gang Wu, Xiang Chen, Gaelle Pierron, Odile Oberlin, Sakina Zaidi, Gordon Lemmon, Pankaj Gupta, Bhavin Vadodaria, John Easton, Marta Gut, Li Ding, Elaine R Mardis, Richard K Wilson, Sheila Shurtleff, Valérie Laurence, Jean Michon, Perrine Marec-Bérard, Ivo Gut, James Downing, Michael Dyer, Jinghui Zhang, Olivier Delattre, None, Genomic Landscape of Ewing Sarcoma Defines an Aggressive Subtype with Co-Association of STAG2 and TP53 Mutations Cancer Discovery. ,vol. 4, pp. 1342- 1353 ,(2014) , 10.1158/2159-8290.CD-14-0622
David J Kwiatkowski, Michael R Palmer, Sergiusz Jozwiak, John Bissler, David Franz, Scott Segal, David Chen, Julian R Sampson, Response to everolimus is seen in TSC-associated SEGAs and angiomyolipomas independent of mutation type and site in TSC1 and TSC2 European Journal of Human Genetics. ,vol. 23, pp. 1665- 1672 ,(2015) , 10.1038/EJHG.2015.47
Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, S. Cenk Sahinalp, David Huntsman, Sohrab P. Shah, deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data PLoS Computational Biology. ,vol. 7, pp. e1001138- ,(2011) , 10.1371/JOURNAL.PCBI.1001138
K. M. Carlson, S. Dou, D. Chi, N. Scavarda, K. Toshima, C. E. Jackson, S. A. Wells, P. J. Goodfellow, H. Donis-Keller, Single missense mutation in the tyrosine kinase catalytic domain of the RET protooncogene is associated with multiple endocrine neoplasia type 2B. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 91, pp. 1579- 1583 ,(1994) , 10.1073/PNAS.91.4.1579