The essential roles of chemistry in high-throughput screening triage

作者: Jayme L Dahlin , Michael A Walters

DOI: 10.4155/FMC.14.60

关键词: CheminformaticsWorkflowContext (language use)High-Throughput Screening AssaysDrug discoveryProcess (engineering)Data scienceNanotechnologyFalse positive paradoxTriage

摘要: It is increasingly clear that academic high-throughput screening (HTS) and virtual HTS triage suffers from a lack of scientists trained in the art science early drug discovery chemistry. Many recent publications report compounds by are most likely artifacts or promiscuous bioactive compounds, these results not placed into context previous studies. For to be successful, it our contention there must exist an partnership between biologists medicinal chemists. Their combined skill sets necessary design robust assays efficient workflows will weed out assay artifacts, false positives, intractable hits, efforts ultimately give projects better chance at identifying truly useful chemical matter. Expertise chemistry, cheminformatics purification sciences (analytical chemistry) can enhance post-HTS process quickly removing problematic chemotypes consideration, while simultaneously prioritizing more promising matter for follow-up testing. only when chemists collaborate effectively manifest its full promise.

参考文章(168)
Ajit Jadhav, Rafaela S. Ferreira, Carleen Klumpp, Bryan T. Mott, Christopher P. Austin, James Inglese, Craig J. Thomas, David J. Maloney, Brian K. Shoichet, Anton Simeonov, Quantitative Analyses of Aggregation, Autofluorescence, and Reactivity Artifacts in a Screen for Inhibitors of a Thiol Protease Journal of Medicinal Chemistry. ,vol. 53, pp. 37- 51 ,(2010) , 10.1021/JM901070C
D. S. Auld, S. Lovell, N. Thorne, W. A. Lea, D. J. Maloney, M. Shen, G. Rai, K. P. Battaile, C. J. Thomas, A. Simeonov, R. P. Hanzlik, J. Inglese, Molecular basis for the high-affinity binding and stabilization of firefly luciferase by PTC124 Proceedings of the National Academy of Sciences of the United States of America. ,vol. 107, pp. 4878- 4883 ,(2010) , 10.1073/PNAS.0909141107
Giorgio Tarzia, Francesca Antonietti, Andrea Duranti, Andrea Tontini, Marco Mor, Silvia Rivara, Pietro Traldi, Giuseppe Astarita, Alvin King, Jason R. Clapper, Daniele Piomelli, Identification of a bioactive impurity in a commercial sample of 6-methyl-2-p-tolylaminobenzo[d][1,3]oxazin-4-one (URB754). Annali Di Chimica. ,vol. 97, pp. 887- 894 ,(2007) , 10.1002/ADIC.200790073
Jeffrey Albert, Niklas Blomberg, Alexander Breeze, Alastair Brown, Jeremy Burrows, Philip Edwards, Rutger Folmer, Stefan Geschwindner, Ed Griffen, Peter Kenny, Thorsten Nowak, Lise-Lotte Olsson, Hitesh Sanganee, Adam Shapiro, An Integrated Approach to Fragment-Based Lead Generation:Philosophy, Strategy and Case Studies from AstraZenecas Drug Discovery Programmes Current Topics in Medicinal Chemistry. ,vol. 7, pp. 1600- 1629 ,(2007) , 10.2174/156802607782341091
Adam B. Shapiro, Grant K. Walkup, Thomas A. Keating, Correction for Interference by Test Samples in High-Throughput Assays: Journal of Biomolecular Screening. ,vol. 14, pp. 1008- 1016 ,(2009) , 10.1177/1087057109341768
Susan L. McGovern, Emilia Caselli, Nikolaus Grigorieff, Brian K. Shoichet, A Common Mechanism Underlying Promiscuous Inhibitors from Virtual and High-Throughput Screening Journal of Medicinal Chemistry. ,vol. 45, pp. 1712- 1722 ,(2002) , 10.1021/JM010533Y
Cele Abad-Zapatero, Daniel Blasi, Ligand Efficiency Indices (LEIs): More than a Simple Efficiency Yardstick Molecular Informatics. ,vol. 30, pp. 122- 132 ,(2011) , 10.1002/MINF.201000161
J. Inglese, D. S. Auld, A. Jadhav, R. L. Johnson, A. Simeonov, A. Yasgar, W. Zheng, C. P. Austin, Quantitative high-throughput screening: a titration-based approach that efficiently identifies biological activities in large chemical libraries. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 11473- 11478 ,(2006) , 10.1073/PNAS.0604348103
Cong Wei, Louis S. Chupak, Thomas Philip, Benjamin M. Johnson, Robert Gentles, Dieter M. Drexler, Screening and Characterization of Reactive Compounds with In Vitro Peptide-Trapping and Liquid Chromatography/High-Resolution Accurate Mass Spectrometry Journal of Biomolecular Screening. ,vol. 19, pp. 297- 307 ,(2014) , 10.1177/1087057113492852
Bert Gunter, Christine Brideau, Bill Pikounis, Andy Liaw, Statistical and Graphical Methods for Quality Control Determination of High-Throughput Screening Data Journal of Biomolecular Screening. ,vol. 8, pp. 624- 633 ,(2003) , 10.1177/1087057103258284