Chapter 3 - An introduction to biological sequence analysis
作者： Kenneth H. Fasman , Steven L. Salzberg
DOI: 10.1016/S0167-7306(08)60460-3
关键词: Guanine 、 DNA 、 Thymine 、 Nucleotide 、 Nucleic acid 、 Cytosine 、 Nucleic acid sequence 、 Biology 、 Biochemistry 、 Sequence analysis
摘要: This chapter introduces biological sequence analysis. Sequences arise in research because of the polymeric nature major macromolecules, nucleic acids, and proteins. The fundamental processes molecular biology involves capturing human genetic code long molecules DNA, which are packaged cell nucleus chromosomes. DNA is composed a chain subunits—the nucleotides adenine, guanine, cytosine, thymine (abbreviated A, G, C, T respectively). usually found form two paired chains, held together by hydrogen bonds between complementary pairs nucleotides. A on one strand always with other, similarly for G C. Most important structural functional components proteins, long, folded chains 20 common amino or peptides.
elsevier.com
sci-hub.se 参考文章(47)
Mark D Adams, Anthony R Kerlavage, Robert D Fleischmann, Rebecca A Fuldner, Carol J Bult, Norman H Lee, Ewen F Kirkness, Keith G Weinstock, Jeannine D Gocayne, Owen White, None, Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature. ,vol. 377, pp. 3- 174 ,(1995)
Maxine Singer, Paul Berg, Dealing with Genes: The Language of Heredity ,(1992)
William R. Pearson, Comparison of methods for searching protein sequence databases Protein Science. ,vol. 4, pp. 1145- 1160 ,(1995) , 10.1002/PRO.5560040613
Adrian J. Gibbs, George A. Mcintyre, The Diagram, a Method for Comparing Sequences FEBS Journal. ,vol. 16, pp. 1- 11 ,(1970) , 10.1111/J.1432-1033.1970.TB01046.X
Michael Ray Gribskov, John Devereux, Sequence Analysis Primer ,(1991)
Mark S. Boguski, Gregory D. Schuler, ESTablishing a human transcript map. Nature Genetics. ,vol. 10, pp. 369- 371 ,(1995) , 10.1038/NG0895-369
Da-Fei Feng, Russell F. Doolittle, Progressive sequence alignment as a prerequisitetto correct phylogenetic trees Journal of Molecular Evolution. ,vol. 25, pp. 351- 360 ,(1987) , 10.1007/BF02603120
Robert D Fleischmann, Mark D Adams, Owen White, Rebecca A Clayton, Ewen F Kirkness, Anthony R Kerlavage, Carol J Bult, Jean-Francois Tomb, Brian A Dougherty, Joseph M Merrick, Keith McKenney, Granger Sutton, Will FitzHugh, Chris Fields, Jeannine D Gocayne, John Scott, Robert Shirley, Li-lng Liu, Anna Glodek, Jenny M Kelley, Janice F Weidman, Cheryl A Phillips, Tracy Spriggs, Eva Hedblom, Matthew D Cotton, Teresa R Utterback, Michael C Hanna, David T Nguyen, Deborah M Saudek, Rhonda C Brandon, Leah D Fine, Janice L Fritchman, Joyce L Fuhrmann, NSM Geoghagen, Cheryl L Gnehm, Lisa A McDonald, Keith V Small, Claire M Fraser, Hamilton O Smith, J Craig Venter, Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science. ,vol. 269, pp. 496- 512 ,(1995) , 10.1126/SCIENCE.7542800
Sherri Matis, Ying Xu, Manesh Shah, Xiaojun Guan, J.Ralph Einstein, Richard Mural, Edward Uberbacher, Detection of RNA polymerase II promoters and polyadenylation sites in human DNA sequence. Computational Biology and Chemistry. ,vol. 20, pp. 135- 140 ,(1996) , 10.1016/S0097-8485(96)80015-5
Stephen F. Altschul, Amino acid substitution matrices from an information theoretic perspective. Journal of Molecular Biology. ,vol. 219, pp. 555- 565 ,(1991) , 10.1016/0022-2836(91)90193-A