VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors
作者： L. Chen , Z. Xiong , L. Sun , J. Yang , Q. Jin
DOI: 10.1093/NAR/GKR989
关键词: Phylogenetic tree 、 Virulence factor 、 Molecular evolution 、 Clade 、 Bacterial genome size 、 Phylogenetics 、 Virulence 、 Genetics 、 Genetic diversity 、 Biology
摘要: The virulence factor database (VFDB, http://www.mgc.ac.cn/VFs/ ) has served as a comprehensive repository of bacterial virulence factors (VFs) for >7 years. Bacterial virulence is an …
oxfordjournals.org
paperity.org
oup.com参考文章(13)
Patrice Gouet, Xavier Robert, Emmanuel Courcelle, ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins Nucleic Acids Research. ,vol. 31, pp. 3320- 3323 ,(2003) , 10.1093/NAR/GKG556
David L Wheeler, Deanna M Church, Ron Edgar, Scott Federhen, Wolfgang Helmberg, Thomas L Madden, Joan U Pontius, Gregory D Schuler, Lynn M Schriml, Edwin Sequeira, Tugba O Suzek, Tatiana A Tatusova, Lukas Wagner, None, Database resources of the National Center for Biotechnology Information: update Nucleic Acids Research. ,vol. 32, pp. 35D- 40 ,(2004) , 10.1093/NAR/GKH073
J. Yang, L. Chen, L. Sun, J. Yu, Q. Jin, VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics Nucleic Acids Research. ,vol. 36, pp. 539- 542 ,(2007) , 10.1093/NAR/GKM951
Liisa Holm, Jong Park, DaliLite workbench for protein structure comparison Bioinformatics. ,vol. 16, pp. 566- 567 ,(2000) , 10.1093/BIOINFORMATICS/16.6.566
Michael G Kemp, Maloy Ghosh, Guoqi Liu, Michael Leffak, The histone deacetylase inhibitor trichostatin A alters the pattern of DNA replication origin activity in human cells Nucleic Acids Research. ,vol. 33, pp. 325- 336 ,(2005) , 10.1093/NAR/GKI177
Paolo Di Tommaso, Sebastien Moretti, Ioannis Xenarios, Miquel Orobitg, Alberto Montanyola, Jia-Ming Chang, Jean-Francois Taly, Cedric Notredame, T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension Nucleic Acids Research. ,vol. 39, pp. 13- 17 ,(2011) , 10.1093/NAR/GKR245
Lihong Chen, Jian Yang, Jun Yu, Zhijian Yao, Lilian Sun, Yan Shen, Qi Jin, VFDB: a reference database for bacterial virulence factors Nucleic Acids Research. ,vol. 33, pp. D325- D328 ,(2004) , 10.1093/NAR/GKI008
K. Tamura, J. Dudley, M. Nei, S. Kumar, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0 Molecular Biology and Evolution. ,vol. 24, pp. 1596- 1599 ,(2007) , 10.1093/MOLBEV/MSM092
Marco Punta, Penny C Coggill, Ruth Y Eberhardt, Jaina Mistry, John Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik LL Sonnhammer, Sean R Eddy, Alex Bateman, Robert D Finn, None, The Pfam protein families database Nucleic Acids Research. ,vol. 30, pp. 276- 280 ,(2000) , 10.1093/NAR/GKR1065
James J Campanella, Ledion Bitincka, John Smalley, MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences. BMC Bioinformatics. ,vol. 4, pp. 29- 29 ,(2003) , 10.1186/1471-2105-4-29