Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum Tuberosum
作者： Michael A. Hardigan , Emily Crisovan , John P. Hamilton , Jeongwoon Kim , Parker Laimbeer
DOI: 10.1105/TPC.15.00538
关键词: Gene 、 Gene family 、 Gene duplication 、 Ploidy 、 Genetic variation 、 Biology 、 Genome 、 Copy-number variation 、 Genetics 、 Structural variation
摘要: … We then performed FISH using each probe on four … family in Solanum identified 99 SAURs in tomato (Solanum lycopersicum) and 134 in potato, showing greater expansion in Solanum …
plantcell.org
cabdirect.org
oup.com参考文章(97)
Zhukuan Cheng, C. Robin Buell, Rod A. Wing, Jiming Jiang, Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers. Chromosome Research. ,vol. 10, pp. 379- 387 ,(2002) , 10.1023/A:1016849618707
Benoit St-Pierre, Sébastien Besseau, Marc Clastre, Vincent Courdavault, Martine Courtois, Joel Crèche, Eric Ducos, Thomas Dugé de Bernonville, Christelle Dutilleul, Gaëlle Glévarec, Nadine Imbault, Arnaud Lanoue, Audrey Oudin, Nicolas Papon, Olivier Pichon, Nathalie Giglioli-Guivarc’h, Deciphering the Evolution, Cell Biology and Regulation of Monoterpene Indole Alkaloids New Light on Alkaloid Biosynthesis and Future Prospects. ,vol. 68, pp. 73- 109 ,(2013) , 10.1016/B978-0-12-408061-4.00003-1
Ben Langmead, Aligning Short Sequencing Reads with Bowtie Current protocols in human genetics. ,vol. 32, ,(2010) , 10.1002/0471250953.BI1107S32
Julie D. Thompson, Toby. J. Gibson, Des G. Higgins, Multiple Sequence Alignment Using ClustalW and ClustalX Current protocols in human genetics. ,(2003) , 10.1002/0471250953.BI0203S00
Luc Varin, Frédéric Marsolais, Martine Richard, Michèle Rouleau, Sulfation and sulfotransferases 6: Biochemistry and molecular biology of plant sulfotransferases. The FASEB Journal. ,vol. 11, pp. 517- 525 ,(1997) , 10.1096/FASEBJ.11.7.9212075
Zhonghua Zhang, Linyong Mao, Huiming Chen, Fengjiao Bu, Guangcun Li, Jinjing Sun, Shuai Li, Honghe Sun, Chen Jiao, Rachel Blakely, Junsong Pan, Run Cai, Ruibang Luo, Yves Van de Peer, Evert Jacobsen, Zhangjun Fei, Sanwen Huang, Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber The Plant Cell. ,vol. 27, pp. 1595- 1604 ,(2015) , 10.1105/TPC.114.135848
J. G. Hawkes, The potato: evolution, biodiversity and genetic resources The potato: evolution, biodiversity and genetic resources.. pp. 259259- ,(1990)
Ying-hui Li, Guangyu Zhou, Jianxin Ma, Wenkai Jiang, Long-guo Jin, Zhouhao Zhang, Yong Guo, Jinbo Zhang, Yi Sui, Liangtao Zheng, Shan-shan Zhang, Qiyang Zuo, Xue-hui Shi, Yan-fei Li, Wan-ke Zhang, Yiyao Hu, Guanyi Kong, Hui-long Hong, Bing Tan, Jian Song, Zhang-xiong Liu, Yaoshen Wang, Hang Ruan, Carol K L Yeung, Jian Liu, Hailong Wang, Li-juan Zhang, Rong-xia Guan, Ke-jing Wang, Wen-bin Li, Shou-yi Chen, Ru-zhen Chang, Zhi Jiang, Scott A Jackson, Ruiqiang Li, Li-juan Qiu, De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits Nature Biotechnology. ,vol. 32, pp. 1045- 1052 ,(2014) , 10.1038/NBT.2979
G. Wenzel, O. Schieder, T. Przewozny, S. K. Sopory, G. Melchers, Comparison of single cell culture derived Solanum tuberosum L. plants and a model for their application in breeding programs. Theoretical and Applied Genetics. ,vol. 55, pp. 49- 55 ,(1979) , 10.1007/BF00285189
Aravinda Chakravarti, A graphical representation of genetic and physical maps: the Marey map. Genomics. ,vol. 11, pp. 219- 222 ,(1991) , 10.1016/0888-7543(91)90123-V