From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks
作者： Ying Li , Kranthi Varala , Gloria M. Coruzzi
DOI: 10.1016/J.TIG.2015.05.005
关键词: Systems biology 、 Computational biology 、 Genetics 、 Transcription factor 、 Experimental challenge 、 Plant species 、 Biology 、 Transcriptional regulation 、 Transcriptome 、 Gene regulatory network
摘要: … regulation (eg, TF to target genes, miRNA to target mRNA), … This study identified transient targets bound by bZIP1 within … demethylation and TF binding interact to regulate fruit ripening in …
osti.gov
sci-hub.se 参考文章(52)
Henriette O’Geen, Seth Frietze, Peggy J. Farnham, Using ChIP-seq Technology to Identify Targets of Zinc Finger Transcription Factors Methods of Molecular Biology. ,vol. 649, pp. 437- 455 ,(2010) , 10.1007/978-1-60761-753-2_27
Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong, Combinatorial binding predicts spatio-temporal cis -regulatory activity Nature. ,vol. 462, pp. 65- 70 ,(2009) , 10.1038/NATURE08531
Martin Meier‐Schellersheim, Iain D. C. Fraser, Frederick Klauschen, Multiscale modeling for biologists. Wiley Interdisciplinary Reviews: Systems Biology and Medicine. ,vol. 1, pp. 4- 14 ,(2009) , 10.1002/WSBM.33
Yu Zhang, Oleg Mayba, Anne Pfeiffer, Hui Shi, James M. Tepperman, Terence P. Speed, Peter H. Quail, A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis PLOS Genetics. ,vol. 9, ,(2013) , 10.1371/JOURNAL.PGEN.1003244
Tatsuya Morisaki, Waltraud G. Müller, Nicole Golob, Davide Mazza, James G. McNally, Single-molecule analysis of transcription factor binding at transcription sites in live cells Nature Communications. ,vol. 5, pp. 4456- 4456 ,(2014) , 10.1038/NCOMMS5456
Walter Schaffner, A hit-and-run mechanism for transcriptional activation? Nature. ,vol. 336, pp. 427- 428 ,(1988) , 10.1038/336427A0
Heike Wollmann, Sarah Holec, Keith Alden, Neil D. Clarke, Pierre-Étienne Jacques, Frédéric Berger, Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome PLoS Genetics. ,vol. 8, pp. e1002658- ,(2012) , 10.1371/JOURNAL.PGEN.1002658
Ron Milo, Shalev Itzkovitz, Nadav Kashtan, Reuven Levitt, Shai Shen-Orr, Inbal Ayzenshtat, Michal Sheffer, Uri Alon, Superfamilies of evolved and designed networks. Science. ,vol. 303, pp. 1538- 1542 ,(2004) , 10.1126/SCIENCE.1089167
Silin Zhong, Zhangjun Fei, Yun-Ru Chen, Yi Zheng, Mingyun Huang, Julia Vrebalov, Ryan McQuinn, Nigel Gapper, Bao Liu, Jenny Xiang, Ying Shao, James J Giovannoni, Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening Nature Biotechnology. ,vol. 31, pp. 154- 159 ,(2013) , 10.1038/NBT.2462
Benjamin Péret, Mathilde Clément, Laurent Nussaume, Thierry Desnos, Root developmental adaptation to phosphate starvation: better safe than sorry Trends in Plant Science. ,vol. 16, pp. 442- 450 ,(2011) , 10.1016/J.TPLANTS.2011.05.006