Sequence-specific 1H, 13C, and 15N assignment of the extended PDZ3 domain of the protein tyrosine phosphatase basophil-like PTP-BL
作者： Gerd Kock , Markus Dicks , Rolf Heumann , Kai S. Erdmann , Raphael Stoll
DOI: 10.1007/S12104-010-9242-9
关键词: Protein tyrosine phosphatase 、 Scaffold protein 、 PDZ domain 、 Protein domain 、 Computational biology 、 Domain (software engineering) 、 Peptide sequence 、 Biochemistry 、 SH2 domain 、 PTPN13 、 Chemistry 、 Structural biology
摘要: Protein tyrosine phosphatase basophil-like (PTP-BL), also known as PTPN13, represents a large multi domain non-transmembrane scaffolding protein that contains five PDZ domains. Here we report the complete resonance assignments of extended PDZ3 PTP-BL. These provide basis for detailed structural investigation interaction between domains PTP-BL well their with ligands. It will lead to better understanding proposed function these in multi-protein complexes assembled by PTB-BL.
core.ac.uk
springer.com
sci-hub.se 参考文章(20)
Raphael Stoll, Christian Renner, Dorothee Ambrosius, Michaela Golob, Wolfgang Voelter, Reinhard Buettner, Anja-Katrin Bosserhoff, Tad A. Holak, Sequence-specific 1H, 13C, and 15N assignment of the human melanoma inhibitory activity (MIA) protein. Journal of Biomolecular NMR. ,vol. 17, pp. 87- 88 ,(2000) , 10.1023/A:1008306918293
Kai S. Erdmann, The protein tyrosine phosphatase PTP-Basophil/Basophil-like. Interacting proteins and molecular functions. FEBS Journal. ,vol. 270, pp. 4789- 4798 ,(2003) , 10.1046/J.1432-1033.2003.03895.X
Marc Nowaczyk, Carsten Berghaus, Raphael Stoll, Matthias Rögner, Preliminary structural characterisation of the 33 kDa protein (PsbO) in solution studied by site-directed mutagenesis and NMR spectroscopy Physical Chemistry Chemical Physics. ,vol. 6, pp. 4878- 4881 ,(2004) , 10.1039/B407316A
Stephan Grzesiek, Ad Bax, Correlating Backbone Amide and Side-Chain Resonances in Larger Proteins By Multiple Relayed Triple Resonance NMR Journal of the American Chemical Society. ,vol. 114, pp. 6291- 6293 ,(1992) , 10.1021/JA00042A003
H. Rehmann, M. Brüning, C. Berghaus, M. Schwarten, K. Köhler, H. Stocker, R. Stoll, F.J. Zwartkruis, A. Wittinghofer, Biochemical characterisation of TCTP questions its function as a guanine nucleotide exchange factor for Rheb FEBS Letters. ,vol. 582, pp. 3005- 3010 ,(2008) , 10.1016/J.FEBSLET.2008.07.057
João H. Morais Cabral, Carlo Petosa, Michael J. Sutcliffe, Sami Raza, Olwyn Byron, Florence Poy, Shirin M. Marfatia, Athar H. Chishti, Robert C. Liddington, Crystal structure of a PDZ domain Nature. ,vol. 382, pp. 649- 652 ,(1996) , 10.1038/382649A0
Christian P. Fetzer, Janelle Sauvageau, Gerd Kock, Carsten Berghaus, Jan-Amadé Bangert, Markus Dicks, Rolf Heumann, Kai S. Erdmann, Raphael Stoll, Sequence-specific 1 H, 13 C, and 15 N backbone assignment of the 28 kDa PDZ2/PDZ3 tandem domain of the protein tyrosine phosphatase PTP-BL Biomolecular Nmr Assignments. ,vol. 1, pp. 151- 153 ,(2007) , 10.1007/S12104-007-9043-Y
Tine Walma, Jan Aelen, Sander B Nabuurs, Marlies Oostendorp, Lieke van den Berk, Wiljan Hendriks, Geerten W Vuister, A closed binding pocket and global destabilization modify the binding properties of an alternatively spliced form of the second PDZ domain of PTP-BL. Structure. ,vol. 12, pp. 11- 20 ,(2004) , 10.1016/J.STR.2003.11.023
Adrian L Davis, James Keeler, Ernest D Laue, Detlef Moskau, Experiments for recording pure-absorption heteronuclear correlation spectra using pulsed field gradients Journal of Magnetic Resonance. ,vol. 98, pp. 207- 216 ,(1992) , 10.1016/0022-2364(92)90126-R
Declan A. Doyle, Alice Lee, John Lewis, Eunjoon Kim, Morgan Sheng, Roderick MacKinnon, Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ. Cell. ,vol. 85, pp. 1067- 1076 ,(1996) , 10.1016/S0092-8674(00)81307-0