Horizontal gene transfer among rhizobia of the Core Cape Subregion of southern Africa
作者： M.N. Dludlu , S.B.M. Chimphango , G. Walker , C.H. Stirton , A.M. Muasya
DOI: 10.1016/J.SAJB.2018.02.406
关键词: Horizontal gene transfer 、 Bradyrhizobium 、 Mesorhizobium 、 Biology 、 Phylogenetics 、 Burkholderia 、 Evolutionary biology 、 Rhizobium 、 Rhizobia 、 Sinorhizobium
摘要: Abstract This study determined the extent of horizontal gene transfer among rhizobial genera in Core Cape Subregion (CCR) South Africa and reconstructed ancestral symbionts legumes. Phylogenies two chromosomal genes (16S rRNA recA) one nodulation (nodA) rhizobia, isolated from diverse legumes CCR, were using Bayesian Maximum Likelihood techniques. A cophylogenetic analysis was used to test for congruence between nodA phylogenies. Five rhizobia (Bradyrhizobium, Burkholderia, Mesorhizobium, Rhizobium Sinorhizobium) studied. phylogeny matK rbcL DNA sequences it reconstruct their methods. The mostly incongruent with that nodA, indicating potential inheritance latter. Mesorhizobium had different evolutionary histories counterparts other parts globe. Burkholderia as CCR Evidence co-diversification observed this highlights a role legume-rhizobia interaction high diversity CCR. Finally, availability compatible competitive ability are discussed possible drivers lack shared Fynbos biome Kwongan Australia.
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sci-hub.se 参考文章(102)
Julio C. Martínez-Romero, Ernesto Ormeño-Orrillo, Marco A. Rogel, Aline López-López, Esperanza Martínez-Romero, Trends in rhizobial evolution and some taxonomic remarks Springer Berlin Heidelberg. pp. 301- 315 ,(2010) , 10.1007/978-3-642-12340-5_18
M. B. Richards, R. M. Cowling, W. D. Stock, Soil nutrient dynamics and community boundaries in the Fynbos vegetation of South Africa Plant Ecology. ,vol. 130, pp. 143- 153 ,(1997) , 10.1023/A:1009742225383
T A Hall, BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT Nucleic Acids Symposium Series. ,vol. 41, pp. 95- 98 ,(1999) , 10.14601/PHYTOPATHOL_MEDITERR-14998U1.29
D. J. Lane, 16S/23S rRNA sequencing Nucleic acid techniques in bacterial systematics. pp. 115- 175 ,(1991)
Matthias Jamin, Markus E. Lautenbacher, TRACER version 1.1: A mathematica package for γ-algebra in arbitrary dimensions Computer Physics Communications. ,vol. 74, pp. 265- 288 ,(1993) , 10.1016/0010-4655(93)90097-V
Jane Wiedenbeck, Frederick M. Cohan, Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. Fems Microbiology Reviews. ,vol. 35, pp. 957- 976 ,(2011) , 10.1111/J.1574-6976.2011.00292.X
Kaisa Haukka, Kristina Lindström, J. Peter W. Young, Three phylogenetic groups of nodA and nifH genes in Sinorhizobium and Mesorhizobium isolates from leguminous trees growing in Africa and Latin America Applied and Environmental Microbiology. ,vol. 64, pp. 419- 426 ,(1998) , 10.1128/AEM.64.2.419-426.1998
Yan Yu, A.J. Harris, Christopher Blair, Xingjin He, RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography Molecular Phylogenetics and Evolution. ,vol. 87, pp. 46- 49 ,(2015) , 10.1016/J.YMPEV.2015.03.008
J HUANG, J GOGARTEN, Ancient horizontal gene transfer can benefit phylogenetic reconstruction Trends in Genetics. ,vol. 22, pp. 361- 366 ,(2006) , 10.1016/J.TIG.2006.05.004
Christoph Kneip, Peter Lockhart, Christine Voß, Uwe-G Maier, Nitrogen fixation in eukaryotes – New models for symbiosis BMC Evolutionary Biology. ,vol. 7, pp. 55- 55 ,(2007) , 10.1186/1471-2148-7-55