Crystal structure of glycosyltrehalose trehalohydrolase from the hyperthermophilic archaeum Sulfolobus solfataricus.

作者: Michael D Feese , Yoichi Kato , Taro Tamada , Masaru Kato , Toshihiro Komeda

DOI: 10.1006/JMBI.2000.3977

关键词: Sulfolobus solfataricusEnzymeGlycosidic bondTrehaloseMultiple isomorphous replacementCrystallographyHydrolaseCovalent bondBinding siteChemistryStereochemistry

摘要: The crystal structure of glycosyltrehalose trehalohydrolase from the hyperthermophilic archaeum Sulfolobus solfataricus KM1 has been solved by multiple isomorphous replacement. enzyme is an α-amylase (family 13) with unique exo-amylolytic activity for glycosyltrehalosides. It cleaves α-1,4 glycosidic bond adjacent to trehalose moiety release and maltooligo saccharide. Unlike most other family 13 glycosidases, does not require Ca2+ activity, it contains N-terminal extension ∼100 amino acid residues that homologous domains found in many glycosidases recognize branched oligosaccharides. Crystallography revealed exist as a homodimer covalently linked intermolecular disulfide at residue C298. existence was confirmed biochemical analysis mutagenesis. forms independent domain connected catalytic extended linker. functionally essential binding site B α-amylases be replaced hydrophobic packing interactions. also very unusual excursion (β/α)8 barrel domain. This originates bottom between helix 6 strand 7, but folds upward distorted α-hairpin form part substrate cleft wall possibly critical enzyme’s selectivity. Participation α-β loop formation novel feature observed known enzymes.

参考文章(73)
Anders Kadziola, Morten Søgaard, Birte Svensson, Richard Haser, Molecular structure of a barley alpha-amylase-inhibitor complex: implications for starch binding and catalysis. Journal of Molecular Biology. ,vol. 278, pp. 205- 217 ,(1998) , 10.1006/JMBI.1998.1683
G. N. Murshudov, A. A. Vagin, E. J. Dodson, Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallographica Section D-biological Crystallography. ,vol. 53, pp. 240- 255 ,(1997) , 10.1107/S0907444996012255
Minxie Qian, Richard Haser, Françoise Payan, Structure and Molecular Model Refinement of Pig Pancreatic α-Amylase at 2·1 Å Resolution Journal of Molecular Biology. ,vol. 231, pp. 785- 799 ,(1993) , 10.1006/JMBI.1993.1326
Anders Kadziola, Jun-ichi Abe, Birte Svensson, Richard Haser, Crystal and Molecular Structure of Barley α-Amylase Journal of Molecular Biology. ,vol. 239, pp. 104- 121 ,(1994) , 10.1006/JMBI.1994.1354
Yoshio Katsuya, Yoshihiro Mezaki, Michio Kubota, Yoshiki Matsuura, Three-dimensional structure of Pseudomonas isoamylase at 2.2 A resolution. Journal of Molecular Biology. ,vol. 281, pp. 885- 897 ,(1998) , 10.1006/JMBI.1998.1992
S Altschula, Warren Gisha, Webb Millerb, E Meyersc, D Lipmana, None, Basic Local Alignment Search Tool Journal of Molecular Biology. ,vol. 215, pp. 403- 410 ,(1990) , 10.1016/S0022-2836(05)80360-2
F. Van Den Akker, I. K. Feil, C. Roach, A. A. Platas, E. A. Merritt, Wim G. J. Hol, Crystal structure of heat-labile enterotoxin from Escherichia coli with increased thermostability introduced by an engineered disulfide bond in the A subunit. Protein Science. ,vol. 6, pp. 2644- 2649 ,(2008) , 10.1002/PRO.5560061219
Zui Fujimoto, Kenji Takase, Nobuko Doui, Mitsuru Momma, Takashi Matsumoto, Hiroshi Mizuno, Crystal structure of a catalytic-site mutant alpha-amylase from Bacillus subtilis complexed with maltopentaose. Journal of Molecular Biology. ,vol. 277, pp. 393- 407 ,(1998) , 10.1006/JMBI.1997.1599
D. E. Tronrud, L. F. Ten Eyck, B. W. Matthews, An efficient general-purpose least-squares refinement program for macromolecular structures Acta Crystallographica Section A. ,vol. 43, pp. 489- 501 ,(1987) , 10.1107/S0108767387099124
H. J. Swift, L. Brady, Z. S. Derewenda, E. J. Dodson, G. G. Dodson, J. P. Turkenburg, A. J. Wilkinson, Structure and molecular model refinement of Aspergillus oryzae (TAKA) α‐amylase: an application of the simulated‐annealing method Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry. ,vol. 47, pp. 535- 544 ,(1991) , 10.1107/S0108768191001970