Exploitation of temporal redundancy in compressed sensing reconstruction of fMRI studies with a prior-based algorithm (PICCS)

作者: C. Chavarrías , J. F. P. J. Abascal , P. Montesinos , M. Desco

DOI: 10.1118/1.4921365

关键词: Compressed sensingIterative reconstructionResting state fMRIFunctional imagingUndersamplingFunctional magnetic resonance imagingImage qualityMagnetic resonance imagingAlgorithmDynamic imagingRedundancy (information theory)Computer science

摘要: Purpose: Compressed sensing is a technique used to accelerate magnetic resonance imaging (MRI) acquisition without compromising image quality. While it has proven particularly useful in dynamic procedures such as cardiac cine, very few authors have applied functional (fMRI). The purpose of the present study was check whether prior constrained compressed (PICCS) algorithm, which based on an available image, can improve statistical maps fMRI better than other strategies that also exploit temporal redundancy. Methods: PICCS compared spatiotemporal total variation (TTV) and k-t FASTER, since they already demonstrated high performance robustness MRI applications, cine resting state fMRI, respectively. for average all undersampled data. Both TTV were solved using split Bregman formulation. K-t FASTER algorithm relies matrix completion reconstruct k-spaces. three algorithms evaluated two datasets with low signal-to-noise ratio (SNR)—BOLD contrast—acquired 7 T preclinical scanner retrospectively at various rates (i.e., acceleration factors). their terms sensitivity/specificity BOLD detection through receiver operating characteristic curves by visual inspection maps. Results: With SNR studies, performed similarly state-of-the-art provided consistent signal ROI. In scenarios factors, still higher TTV, whereas failed provide significant Conclusions: comparison between reconstructions (PICCS, FASTER) redundancy fMRI. prior-based PICCS, preserved activation noisy scenarios. potentially reach factor ×8 contrast ROI area under curve over 0.99.

参考文章(49)
J. F. P. J. Abascal, P. Montesinos, E. Marinetto, J. Pascau, J. J. Vaquero, M. Desco, A Prior-Based Image Variation (PRIVA) Approach Applied to Motion-Based Compressed Sensing Cardiac Cine MRI Springer, Cham. pp. 233- 236 ,(2014) , 10.1007/978-3-319-00846-2_58
P. Montesinos, J. F. P. J. Abascal, C. Chavarrías, J. J. Vaquero, M. Desco, Compressed Sensing for Cardiac MRI Cine Sequences: A Real Implementation on a Small-Animal Scanner Springer, Cham. pp. 214- 217 ,(2014) , 10.1007/978-3-319-00846-2_53
C. Chavarrias, J. F. P. J. Abascal, P. Montesinos, M. Desco, How Does Compressed Sensing Affect Activation Maps in Rat fMRI Springer, Cham. pp. 202- 205 ,(2014) , 10.1007/978-3-319-00846-2_50
Mark Chiew, Stephen M. Smith, Peter J. Koopmans, Nadine N. Graedel, Thomas Blumensath, Karla L. Miller, k-t FASTER: Acceleration of functional MRI data acquisition using low rank constraints. Magnetic Resonance in Medicine. ,vol. 74, pp. 353- 364 ,(2015) , 10.1002/MRM.25395
D. J. Holland, C. Liu, X. Song, E. L. Mazerolle, M. T. Stevens, A. J. Sederman, L. F. Gladden, R. C. N. D'Arcy, C. V. Bowen, S. D. Beyea, Compressed sensing reconstruction improves sensitivity of variable density spiral fMRI Magnetic Resonance in Medicine. ,vol. 70, pp. 1634- 1643 ,(2013) , 10.1002/MRM.24621
Steen Moeller, Essa Yacoub, Cheryl A. Olman, Edward Auerbach, John Strupp, Noam Harel, Kâmil Uğurbil, Multiband Multislice GE-EPI at 7 Tesla, With 16-Fold Acceleration Using Partial Parallel Imaging With Application to High Spatial and Temporal Whole-Brain FMRI Magnetic Resonance in Medicine. ,vol. 63, pp. 1144- 1153 ,(2010) , 10.1002/MRM.22361
Zhihua Qi, Guang-Hong Chen, Performance studies of four-dimensional cone beam computed tomography. Physics in Medicine and Biology. ,vol. 56, pp. 6709- 6721 ,(2011) , 10.1088/0031-9155/56/20/013
Yilun Wang, Junfeng Yang, Wotao Yin, Yin Zhang, A New Alternating Minimization Algorithm for Total Variation Image Reconstruction Siam Journal on Imaging Sciences. ,vol. 1, pp. 248- 272 ,(2008) , 10.1137/080724265
Hien M. Nguyen, Gary H. Glover, A Modified Generalized Series Approach: Application to Sparsely Sampled fMRI IEEE Transactions on Biomedical Engineering. ,vol. 60, pp. 2867- 2877 ,(2013) , 10.1109/TBME.2013.2265699
Rafael L. O'Halloran, Zhifei Wen, James H. Holmes, Sean B. Fain, Iterative projection reconstruction of time-resolved images using highly-constrained back-projection (HYPR) Magnetic Resonance in Medicine. ,vol. 59, pp. 132- 139 ,(2008) , 10.1002/MRM.21439