Tailored-pharmacophore model to enhance virtual screening and drug discovery: a case study on the identification of potential inhibitors against drug-resistant Mycobacterium tuberculosis (3R)-hydroxyacyl-ACP dehydratases.

作者: Kgothatso E Machaba , Ndumiso N Mhlongo , Yussif M Dokurugu , Mahmoud ES Soliman

DOI: 10.4155/FMC-2017-0020

关键词: ProdrugDrug resistanceVirtual screeningDrugBioinformaticsMycobacterium tuberculosisIn silicoDrug discoveryPharmacophoreBiology

摘要: Aim: Virtual screening (VS) is powerful tool in discovering molecular inhibitors that are most likely to bind drug targets of interest. Herein, we introduce a novel VS approach, so-called ‘tailored-pharmacophore’, order explore overcome resistance. Methodology & results: The emergence and spread resistance strains tuberculosis one the critical issues healthcare. A tailored-pharmacophore approach was found promising identify silico predicted hit with better binding affinities case mutations MtbHadAB as compared thiacetazone, prodrug used clinical treatment tuberculosis. Conclusion: This can potentially be enforced for discovery design drugs against wide range targets.

参考文章(39)
Yu Dong, Jun Li, Xiaodi Qiu, Chuanqiang Yan, Xuemei Li, Expression, purification and crystallization of the (3R)-hydroxyacyl-ACP dehydratase HadAB complex from Mycobacterium tuberculosis. Protein Expression and Purification. ,vol. 114, pp. 115- 120 ,(2015) , 10.1016/J.PEP.2015.06.007
Apoorva Bhatt, Virginie Molle, Gurdyal S. Besra, William R. Jacobs, Laurent Kremer, The Mycobacterium tuberculosis FAS-II condensing enzymes: their role in mycolic acid biosynthesis, acid-fastness, pathogenesis and in future drug development. Molecular Microbiology. ,vol. 64, pp. 1442- 1454 ,(2007) , 10.1111/J.1365-2958.2007.05761.X
A. Kling, P. Lukat, D. V. Almeida, A. Bauer, E. Fontaine, S. Sordello, N. Zaburannyi, J. Herrmann, S. C. Wenzel, C. Konig, N. C. Ammerman, M. B. Barrio, K. Borchers, F. Bordon-Pallier, M. Bronstrup, G. Courtemanche, M. Gerlitz, M. Geslin, P. Hammann, D. W. Heinz, H. Hoffmann, S. Klieber, M. Kohlmann, M. Kurz, C. Lair, H. Matter, E. Nuermberger, S. Tyagi, L. Fraisse, J. H. Grosset, S. Lagrange, R. Muller, Targeting DnaN for tuberculosis therapy using novel griselimycins Science. ,vol. 348, pp. 1106- 1112 ,(2015) , 10.1126/SCIENCE.AAA4690
Anna E. Grzegorzewicz, Nathalie Eynard, Annaïk Quémard, E. Jeffrey North, Alyssa Margolis, Jared J. Lindenberger, Victoria Jones, Jana Korduláková, Patrick J. Brennan, Richard E. Lee, Donald R. Ronning, Michael R. McNeil, Mary Jackson, Covalent modification of the Mycobacterium tuberculosis FAS-II dehydratase by Isoxyl and Thiacetazone. ACS Infectious Diseases. ,vol. 1, pp. 91- 97 ,(2015) , 10.1021/ID500032Q
María Isabel Fernández-Bachiller, André Horatscheck, Michael Lisurek, Jörg Rademann, Alzheimer's disease: identification and development of β-secretase (BACE-1) binding fragments and inhibitors by dynamic ligation screening (DLS). ChemMedChem. ,vol. 8, pp. 1041- 1056 ,(2013) , 10.1002/CMDC.201300078
William L. Jorgensen, Jayaraman Chandrasekhar, Jeffry D. Madura, Roger W. Impey, Michael L. Klein, Comparison of simple potential functions for simulating liquid water The Journal of Chemical Physics. ,vol. 79, pp. 926- 935 ,(1983) , 10.1063/1.445869
Douglas B. Kitchen, Hélène Decornez, John R. Furr, Jürgen Bajorath, Docking and scoring in virtual screening for drug discovery: methods and applications Nature Reviews Drug Discovery. ,vol. 3, pp. 935- 949 ,(2004) , 10.1038/NRD1549
Anna E. Grzegorzewicz, Jana Korduláková, Victoria Jones, Sarah E. M. Born, Juan M. Belardinelli, Adrien Vaquié, Vijay A. K. B. Gundi, Jan Madacki, Nawel Slama, Françoise Laval, Julien Vaubourgeix, Rebecca M. Crew, Brigitte Gicquel, Mamadou Daffé, Hector R. Morbidoni, Patrick J. Brennan, Annaik Quémard, Michael R. McNeil, Mary Jackson, A Common Mechanism of Inhibition of the Mycobacterium tuberculosis Mycolic Acid Biosynthetic Pathway by Isoxyl and Thiacetazone Journal of Biological Chemistry. ,vol. 287, pp. 38434- 38441 ,(2012) , 10.1074/JBC.M112.400994
Dandan Huang, Yonglan Liu, Bozhi Shi, Yueting Li, Guixue Wang, Guizhao Liang, Comprehensive 3D-QSAR and binding mode of BACE-1 inhibitors using R-group search and molecular docking. Journal of Molecular Graphics & Modelling. ,vol. 45, pp. 65- 83 ,(2013) , 10.1016/J.JMGM.2013.08.003