Emergent Properties of Reduced-Genome Escherichia coli

作者: Gyorgy Posfai , Guy Plunkett III , Tamás Fehér , David Frisch , Günther M Keil

DOI: 10.1126/SCIENCE.1126439

关键词: Synthetic biologyGeneBiologyMutationMutagenesis (molecular biology technique)VirulenceGenomeEscherichia coliPlasmidGenetics

摘要: With the use of synthetic biology, we reduced Escherichia coli K-12 genome by making planned, precise deletions. The multiple-deletion series (MDS) strains, with reductions up to 15%, were designed identifying nonessential genes and sequences for elimination, including recombinogenic or mobile DNA cryptic virulence genes, while preserving good growth profiles protein production. Genome reduction also led unanticipated beneficial properties: high electroporation efficiency accurate propagation recombinant plasmids that unstable in other strains. Eradication stress-induced transposition evidently stabilized MDS genomes provided some new properties.

参考文章(16)
Tamás Fehér, Botond Cseh, Kinga Umenhoffer, Ildikó Karcagi, György Pósfai, Characterization of cycA mutants of Escherichia coli Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis. ,vol. 595, pp. 184- 190 ,(2006) , 10.1016/J.MRFMMM.2005.11.004
Robert J. Wargel, Craig A. Shadur, Francis C. Neuhaus, Mechanism of d-Cycloserine Action: Transport Mutants for d-Alanine, d-Cycloserine, and Glycine1 Journal of Bacteriology. ,vol. 105, pp. 1028- 1035 ,(1971) , 10.1128/JB.105.3.1028-1035.1971
R. R. B. Russell, Mapping of a d-Cycloserine Resistance Locus in Escherichia coli K-12 Journal of Bacteriology. ,vol. 111, pp. 622- 624 ,(1972) , 10.1128/JB.111.2.622-624.1972
Gregor Meyers, Christoph Wirblich, Heinz-Jürgen Thiel, Rabbit hemorrhagic disease virus--molecular cloning and nucleotide sequencing of a calicivirus genome. Virology. ,vol. 184, pp. 664- 676 ,(1991) , 10.1016/0042-6822(91)90436-F
M. H. Serres, GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins Nucleic Acids Research. ,vol. 32, pp. 300D- 302 ,(2004) , 10.1093/NAR/GKH087
Hiroaki Inoue, Hiroshi Nojima, Hiroto Okayama, High efficiency transformation of Escherichia coli with plasmids Gene. ,vol. 96, pp. 23- 28 ,(1990) , 10.1016/0378-1119(90)90336-P
B. G. Hall, Activation of the bgl operon by adaptive mutation. Molecular Biology and Evolution. ,vol. 15, pp. 1- 5 ,(1998) , 10.1093/OXFORDJOURNALS.MOLBEV.A025842
Yasuhiko Sekine, Naoki Eisaki, Kiyoaki Kobayashi, Eiichi Ohtsubo, Isolation and characterization of IS1 circles Gene. ,vol. 191, pp. 183- 190 ,(1997) , 10.1016/S0378-1119(97)00057-7
Laura S. Frost, Raphael Leplae, Anne O. Summers, Ariane Toussaint, Mobile genetic elements: the agents of open source evolution. Nature Reviews Microbiology. ,vol. 3, pp. 722- 732 ,(2005) , 10.1038/NRMICRO1235
S. G. Grant, J. Jessee, F. R. Bloom, D. Hanahan, Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 87, pp. 4645- 4649 ,(1990) , 10.1073/PNAS.87.12.4645