Genome Sequence of the Yeast Saprochaete ingens CBS 517.90.
作者： Viktória Hodorová , Hana Lichancová , Stanislav Zubenko , Karolina Sienkiewicz , Sarah Mae U Penir
DOI: 10.1128/MRA.01366-19
关键词: Whole genome sequencing 、 Nanopore sequencing 、 Sequence assembly 、 Yeast 、 Minion 、 Saprochaete 、 Computational biology 、 Biology
摘要: Chromosome-scale genome assembly of the yeast Saprochaete ingens CBS 517.90 was determined by a combination technologies producing short (HiSeq X; Illumina) and long (MinION; Oxford Nanopore Tec ...
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Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern, Stephan Waack, Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinformatics. ,vol. 7, pp. 62- 62 ,(2006) , 10.1186/1471-2105-7-62
Hadley Wickham, ggplot2: Elegant Graphics for Data Analysis ,(2009)
M SMITH, G POOT, Genome comparisons in the genus Dipodascus de Lagerheim Fems Yeast Research. ,vol. 3, pp. 301- 311 ,(2003) , 10.1016/S1567-1356(03)00013-8
Bruce J. Walker, Thomas Abeel, Terrance Shea, Margaret Priest, Amr Abouelliel, Sharadha Sakthikumar, Christina A. Cuomo, Qiandong Zeng, Jennifer Wortman, Sarah K. Young, Ashlee M. Earl, Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement PLoS ONE. ,vol. 9, pp. e112963- ,(2014) , 10.1371/JOURNAL.PONE.0112963
J. P. van der Walt, Amelia E. Van Kerken, Candida ingens nov. spec. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. ,vol. 27, pp. 284- 286 ,(1961) , 10.1007/BF02538457
Teun Boekhout, Cletus P Kurtzman, Jack W Fell, The yeasts : a taxonomic study Published in <b>2011</b> in Amsterdam by Elsevier. ,(2011)
H. Li, R. Durbin, Fast and accurate short read alignment with Burrows–Wheeler transform Bioinformatics. ,vol. 25, pp. 1754- 1760 ,(2009) , 10.1093/BIOINFORMATICS/BTP324
Martin C Frith, Risa Kawaguchi, Split-alignment of genomes finds orthologies more accurately. Genome Biology. ,vol. 16, pp. 106- 106 ,(2015) , 10.1186/S13059-015-0670-9
Heng Li, Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences Bioinformatics. ,vol. 32, pp. 2103- 2110 ,(2016) , 10.1093/BIOINFORMATICS/BTW152
Robert Vaser, Ivan Sović, Niranjan Nagarajan, Mile Šikić, Fast and accurate de novo genome assembly from long uncorrected reads Genome Research. ,vol. 27, pp. 737- 746 ,(2017) , 10.1101/GR.214270.116