Protein aggregation: in silico algorithms and applications.
作者： A. Mary Thangakani , M. Michael Gromiha , R. Prabakaran , Puneet Rawat , Sandeep Kumar
DOI: 10.1007/S12551-021-00778-W
关键词: Protein aggregation 、 Computer science 、 Algorithm 、 Aggregation kinetics 、 In silico 、 Aggregation rate
摘要: … ), and molecular dynamics studies related to aggregation. With a multitude of prediction models related to aggregation already available to the scientific community, the field of protein …
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scilit.net参考文章(165)
M SUNDE, C BLAKE, The structure of amyloid fibrils by electron microscopy and X-ray diffraction. Advances in Protein Chemistry. ,vol. 50, pp. 123- 159 ,(1997) , 10.1016/S0065-3233(08)60320-4
Xiaoling Wang, Tapan K. Das, Satish K. Singh, Sandeep Kumar, Potential aggregation prone regions in biotherapeutics: A survey of commercial monoclonal antibodies mAbs. ,vol. 1, pp. 254- 267 ,(2009) , 10.4161/MABS.1.3.8035
William Thomas Astbury, Sylvia Dickinson, Kenneth Bailey, The X-ray interpretation of denaturation and the structure of the seed globulins Biochemical Journal. ,vol. 29, pp. 2351- 2360.1 ,(1935) , 10.1042/BJ0292351
Anthony L Fink, Protein aggregation: folding aggregates, inclusion bodies and amyloid Folding and Design. ,vol. 3, ,(1998) , 10.1016/S1359-0278(98)00002-9
Aimee M. Morris, Murielle A. Watzky, Richard G. Finke, Protein aggregation kinetics, mechanism, and curve-fitting: A review of the literature Biochimica et Biophysica Acta. ,vol. 1794, pp. 375- 397 ,(2009) , 10.1016/J.BBAPAP.2008.10.016
Fabrizio Chiti, Massimo Stefani, Niccolò Taddei, Giampietro Ramponi, Christopher M. Dobson, Rationalization of the effects of mutations on peptide and protein aggregation rates. Nature. ,vol. 424, pp. 805- 808 ,(2003) , 10.1038/NATURE01891
M. Lopez de la Paz, L. Serrano, Sequence determinants of amyloid fibril formation Proceedings of the National Academy of Sciences of the United States of America. ,vol. 101, pp. 87- 92 ,(2004) , 10.1073/PNAS.2634884100
Jean D. Sipe, Alan S. Cohen, Review: History of the Amyloid Fibril Journal of Structural Biology. ,vol. 130, pp. 88- 98 ,(2000) , 10.1006/JSBI.2000.4221
Manuela López de la Paz, Giacomo M.S. de Mori, Luis Serrano, Giorgio Colombo, Sequence dependence of amyloid fibril formation : Insights from molecular dynamics simulations Journal of Molecular Biology. ,vol. 349, pp. 583- 596 ,(2005) , 10.1016/J.JMB.2005.03.081
Linh Tran, Tâp Ha-Duong, Exploring the Alzheimer amyloid-β peptide conformational ensemble: A review of molecular dynamics approaches. Peptides. ,vol. 69, pp. 86- 91 ,(2015) , 10.1016/J.PEPTIDES.2015.04.009