Computational studies of reaction mechanisms of methane monooxygenase and ribonucleotide reductase.

作者: Maricel Torrent , Djamaladdin G. Musaev , Harold Basch , Keiji Morokuma

DOI: 10.1002/JCC.1157

关键词: RedoxMolecular modelMethane monooxygenaseHydroxylationRibonucleotide reductasePhotochemistryMetalloproteinCatalytic cycleCombinatorial chemistryCarboxylateChemistry

摘要: An overview of the computational efforts made by our group during last few years in field nonheme diiron proteins is presented. Through application ab initio methodology to a reasonable set molecular models, significant progress understanding how soluble Methane Monooxygenase system achieves hydroxylation methane and catalytic cycle Ribonucleotide Reductase initiated. In particular, current studies reveal more detail (1) nature key intermediates reaction cycles these two metalloenzymes, (2) details iron centers regulate systems, (3) important aspects carboxylate ligands active sites may tailor enzymatic needs metalloprotein. This knowledge also leads novel connections between enzymes. The coordinative unsaturation shifts investigated herein are properties that likely be general impact proteins. control redox chemistry enzyme binuclear metal center, analyzed here, should find common ground among other bimetallic systems as well.

参考文章(97)
S. J. Lippard, W. B. Tolman, R. Lynn Rardin, Monodentate carboxylate complexes and the carboxylate shift : implications for polymetalloprotein structure and function New Journal of Chemistry. ,vol. 15, pp. 417- 430 ,(1991)
Harold Basch, Koichi Mogi, Djamaladdin G. Musaev, Keiji Morokuma, Mechanism of the methane → methanol conversion reaction catalyzed by methane monooxygenase: A density functional study Journal of the American Chemical Society. ,vol. 121, pp. 7249- 7256 ,(1999) , 10.1021/JA9906296
Carsten Krebs, Boi Hanh Huynh, Intermediates in oxygen activation reactions of diiron enzymes Wiley‐VCH Verlag GmbH. pp. 253- 273 ,(2008) , 10.1002/9783527613700.CH16
J Stubbe, Ribonucleotide reductases: amazing and confusing. Journal of Biological Chemistry. ,vol. 265, pp. 5329- 5332 ,(1990) , 10.1016/S0021-9258(19)39357-3
P Reichard, A Ehrenberg, Ribonucleotide reductase--a radical enzyme. Science. ,vol. 221, pp. 514- 519 ,(1983) , 10.1126/SCIENCE.6306767
Mats Svensson, Stéphane Humbel, Robert D. J. Froese, Toshiaki Matsubara, Stefan Sieber, Keiji Morokuma, ONIOM: A Multilayered Integrated MO + MM Method for Geometry Optimizations and Single Point Energy Predictions. A Test for Diels−Alder Reactions and Pt(P(t-Bu)3)2 + H2 Oxidative Addition The Journal of Physical Chemistry. ,vol. 100, pp. 19357- 19363 ,(1996) , 10.1021/JP962071J
Kazunari Yoshizawa, Two-step concerted mechanism for alkane hydroxylation on the ferryl active site of methane monooxygenase Journal of Biological Inorganic Chemistry. ,vol. 3, pp. 318- 324 ,(1998) , 10.1007/S007750050239
Hui Zheng, Sun Jae Yoo, Eckard Münck, Lawrence Que, The Flexible Fe2(μ-O)2 Diamond Core: A Terminal Iron(IV)−Oxo Species Generated from the Oxidation of a Bis(μ-oxo)diiron(III) Complex Journal of the American Chemical Society. ,vol. 122, pp. 3789- 3790 ,(2000) , 10.1021/JA9936722