Simultaneous Recovery of DNA and RNA from Formalin-Fixed Paraffin-Embedded Tissue and Application in Epidemiologic Studies

作者: Wen-Yi Huang , Timothy M. Sheehy , Lee E. Moore , Ann W. Hsing , Mark P. Purdue

DOI: 10.1158/1055-9965.EPI-10-0091

关键词: BiologyRapid accessCancerDNAPathologyFormalin fixed paraffin embeddedRNABiological materialsCarcinogenesisNucleic acid

摘要: Analysis of DNA, RNA, and protein extracted from tissue specimens in epidemiologic studies is useful for assessing etiologic heterogeneity, mechanisms carcinogenesis, biomarkers prognosis prediction treatment responses. Fresh-frozen samples may provide optimal quality nucleic acids, but pose multiple logistical considerations, including rapid access to tissues before histopathologic examination specialized equipment freezing, transport, storage; addition, morphology often compromised. In contrast, formalin-fixed paraffin-embedded (FFPE) samples, enormous archives existing specimens, represent a valuable source retrospective biological material research, although presenting different limitations compared with frozen samples. Recent efforts have made progress toward enhancing the utility FFPE molecular analyses, DNA studies, increasingly RNA other macromolecules. Here, we report method that used simultaneously recover appreciable quantity discuss briefly application tumor markers studies. Cancer Epidemiol Biomarkers Prev; 19(4); 973–7. ©2010 AACR.

参考文章(18)
Maureen Cronin, Mylan Pho, Debjani Dutta, James C. Stephans, Steven Shak, Michael C. Kiefer, Jose M. Esteban, Joffre B. Baker, Measurement of gene expression in archival paraffin-embedded tissues: development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay. American Journal of Pathology. ,vol. 164, pp. 35- 42 ,(2004) , 10.1016/S0002-9440(10)63093-3
Stephen M. Hewitt, [20] The Application of Tissue Microarrays in the Validation of Microarray Results Methods in Enzymology. ,vol. 410, pp. 400- 415 ,(2006) , 10.1016/S0076-6879(06)10020-8
Joseph F. Fraumeni, David Schottenfeld, Cancer Epidemiology and Prevention ,(1982)
Shannon K Penland, Temitope O Keku, Chad Torrice, Xiaping He, Janakiraman Krishnamurthy, Katherine A Hoadley, John T Woosley, Nancy E Thomas, Charles M Perou, Robert S Sandler, Norman E Sharpless, RNA expression analysis of formalin-fixed paraffin-embedded tumors. Laboratory Investigation. ,vol. 87, pp. 383- 391 ,(2007) , 10.1038/LABINVEST.3700529
Suzanne E. Little, Raisa Vuononvirta, Jorge S. Reis-Filho, Rachael Natrajan, Marjan Iravani, Kerry Fenwick, Alan Mackay, Alan Ashworth, Kathy Pritchard-Jones, Chris Jones, Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA. Genomics. ,vol. 87, pp. 298- 306 ,(2006) , 10.1016/J.YGENO.2005.09.019
Montserrat García-Closas, Mark E. Sherman, Roel Vermeulen, Nathaniel Rothman, Lee E. Moore, Martyn T. Smith, Application of Biomarkers in Cancer Epidemiology ,(1997)
Mark Abramovitz, Maja Ordanic-Kodani, Yuefang Wang, Zhenhong Li, Charles Catzavelos, Mark Bouzyk, George W. Sledge, Carlos S. Moreno, Brian Leyland-Jones, Optimization of RNA extraction from FFPE tissues for expression profiling in the DASL assay. BioTechniques. ,vol. 44, pp. 417- 423 ,(2008) , 10.2144/000112703
Sharoni Jacobs, Ella R. Thompson, Yasuhito Nannya, Go Yamamoto, Raji Pillai, Seishi Ogawa, Dione K. Bailey, Ian G. Campbell, Genome-wide, high-resolution detection of copy number, loss of heterozygosity, and genotypes from formalin-fixed, paraffin-embedded tumor tissue using microarrays. Cancer Research. ,vol. 67, pp. 2544- 2551 ,(2007) , 10.1158/0008-5472.CAN-06-3597
S P Hussain, J Schwank, F Staib, X W Wang, C C Harris, TP53 mutations and hepatocellular carcinoma: insights into the etiology and pathogenesis of liver cancer Oncogene. ,vol. 26, pp. 2166- 2176 ,(2007) , 10.1038/SJ.ONC.1210279
Renata A. Coudry, Sibele I. Meireles, Radka Stoyanova, Harry S. Cooper, Alan Carpino, Xianqun Wang, Paul F. Engstrom, Margie L. Clapper, Successful Application of Microarray Technology to Microdissected Formalin-Fixed, Paraffin-Embedded Tissue The Journal of Molecular Diagnostics. ,vol. 9, pp. 70- 79 ,(2007) , 10.2353/JMOLDX.2007.060004