Identification of Early Warning Signals at the Critical Transition Point of Colorectal Cancer Based on Dynamic Network Analysis.

作者: Lei Liu , Zhuo Shao , Jiaxuan Lv , Fei Xu , Sibo Ren

DOI: 10.3389/FBIOE.2020.00530

关键词: Warning systemCritical transitionCancerMutation (genetic algorithm)OncologyColorectal cancerDiseaseMedicineDynamic network analysisIdentification (information)Internal medicine

摘要: Colorectal cancer (CRC) is one of the leading causes cancer-related death worldwide. Due to lack early diagnosis methods and warning signals CRC its strong heterogeneity, determination accurate treatments for identification specific are still urgent problems researchers. In this study, expression profiles tissues tumour-adjacent in 28 patients were combined into a human protein–protein interaction (PPI) network construct each patient. A propagation method was used obtain mutant giant cluster (GC) containing more than 90% mutation information Next, selection rules applied GC mine sequence driver genes The sequences from with same type integrated different types CRC, which provide reference clinical disease progression. Finally, dynamic analysis biomarkers (DNBs) patients. These DNBs verified by staging data identify critical transition point between pre-disease state tumour Twelve known drug targets found DNBs, 6 them have been as anticancer drugs treatment. This study provides important prognosis, treatment especially pre-emptive treatments. It great significance reducing incidence mortality CRC.

参考文章(48)
Benno Schwikowski, Peter Uetz, Stanley Fields, A NETWORK OF PROTEIN?PROTEIN INTERACTIONS IN YEAST Nature Biotechnology. ,vol. 18, pp. 1257- 1261 ,(2000) , 10.1038/82360
Rui Liu, Xiangdong Wang, Kazuyuki Aihara, Luonan Chen, Early Diagnosis of Complex Diseases by Molecular Biomarkers, Network Biomarkers, and Dynamical Network Biomarkers Medicinal Research Reviews. ,vol. 34, pp. 455- 478 ,(2014) , 10.1002/MED.21293
Justin Guinney, Rodrigo Dienstmann, Xin Wang, Aurélien De Reynies, Andreas Schlicker, Charlotte Soneson, Laetitia Marisa, Paul Roepman, Gift Nyamundanda, Paolo Angelino, Brian M Bot, Jeffrey S Morris, Iris M Simon, Sarah Gerster, Evelyn Fessler, Felipe De Sousa E Melo, Edoardo Missiaglia, Hena Ramay, David Barras, Krisztian Homicsko, Dipen Maru, Ganiraju C Manyam, Bradley Broom, Valerie Boige, Beatriz Perez-Villamil, Ted Laderas, Ramon Salazar, Joe W Gray, Douglas Hanahan, Josep Tabernero, Rene Bernards, Stephen H Friend, Pierre Laurent-Puig, Jan Paul Medema, Anguraj Sadanandam, Lodewyk Wessels, Mauro Delorenzi, Scott Kopetz, Louis Vermeulen, Sabine Tejpar, None, The consensus molecular subtypes of colorectal cancer Nature Medicine. ,vol. 21, pp. 1350- 1356 ,(2015) , 10.1038/NM.3967
Rui Liu, Meiyi Li, Zhi-Ping Liu, Jiarui Wu, Luonan Chen, Kazuyuki Aihara, Identifying critical transitions and their leading biomolecular networks in complex diseases Scientific Reports. ,vol. 2, pp. 813- 813 ,(2012) , 10.1038/SREP00813
A. Liberzon, A. Subramanian, R. Pinchback, H. Thorvaldsdottir, P. Tamayo, J. P. Mesirov, Molecular signatures database (MSigDB) 3.0 Bioinformatics. ,vol. 27, pp. 1739- 1740 ,(2011) , 10.1093/BIOINFORMATICS/BTR260
Zhi-Qin Zhao, Guo-Sheng Han, Zu-Guo Yu, Jinyan Li, Laplacian normalization and random walk on heterogeneous networks for disease-gene prioritization Computational Biology and Chemistry. ,vol. 57, pp. 21- 28 ,(2015) , 10.1016/J.COMPBIOLCHEM.2015.02.008
Anat Achiron, Itamar Grotto, Ran Balicer, David Magalashvili, Anna Feldman, Michael Gurevich, Microarray analysis identifies altered regulation of nuclear receptor family members in the pre-disease state of multiple sclerosis. Neurobiology of Disease. ,vol. 38, pp. 201- 209 ,(2010) , 10.1016/J.NBD.2009.12.029
Luonan Chen, Rui Liu, Zhi-Ping Liu, Meiyi Li, Kazuyuki Aihara, Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers Scientific Reports. ,vol. 2, pp. 342- 342 ,(2012) , 10.1038/SREP00342
Oron Vanunu, Oded Magger, Eytan Ruppin, Tomer Shlomi, Roded Sharan, Associating Genes and Protein Complexes with Disease via Network Propagation PLoS Computational Biology. ,vol. 6, pp. e1000641- ,(2010) , 10.1371/JOURNAL.PCBI.1000641
Myoung Sook Kim, Juna Lee, David Sidransky, DNA methylation markers in colorectal cancer. Cancer and Metastasis Reviews. ,vol. 29, pp. 181- 206 ,(2010) , 10.1007/S10555-010-9207-6