Structural patterns and genetic diversity among oat (Avena) landraces assessed by microsatellite markers and morphological analysis

作者: Nikolaos Nikoloudakis , Konstantinos Bladenopoulos , Andreas Katsiotis

DOI: 10.1007/S10722-015-0284-9

关键词: Genetic diversityGenetic erosionEastern europeanMicrosatelliteGeneticsBiologyAllele frequencyGermplasmGenetic markerGenotype

摘要: As a counterweight to genetic erosion, landraces could become important germplasm resources for breeding. In the present study diversity of 62 Greek and Eastern European oat accessions (seven cultivars 55 common red collected from 1904 1960) was studied using simple sequence repeats 31 morphological descriptors. High levels polymorphism were detected 209 distinctive alleles identified; on average 14.65 per primer. Both, principal component analysis derived data, unweighted pair group method with arithmetic mean molecular clustered genotypes according their type (common oats). addition, variation showed that there noteworthy differences within designated geographic regions. Moreover, more discrete subpopulation structure identified based allele frequency Bayesian clustering approach. A clear distinction evident among oats suggesting they should be considered as separate species.

参考文章(36)
Daniel Zohary, Maria Hopf, Ehud Weiss, Domestication of plants in the old world ,(1988)
Bernard R. Baum, Oats: wild and cultivated. A monograph of the genus Avena L. (Poaceae). Oats: wild and cultivated. A monograph of the genus Avena L. (Poaceae).. ,(1977)
A. C. Newton, T. Akar, J. P. Baresel, P. J. Bebeli, E. Bettencourt, K. V. Bladenopoulos, J. H. Czembor, D. A. Fasoula, A. Katsiotis, K. Koutis, M. Koutsika-Sotiriou, G. Kovacs, H. Larsson, M. A. A. Pinheiro de Carvalho, D. Rubiales, J. Russell, T. M. M. Dos Santos, M. C. Vaz Patto, Cereal landraces for sustainable agriculture Springer Netherlands. pp. 147- 186 ,(2011) , 10.1007/978-94-007-0394-0_10
Igor G. Loskutov, The collection of wild oat species of C.I.S. as a source of diversity in agricultural traits Genetic Resources and Crop Evolution. ,vol. 45, pp. 291- 295 ,(1998) , 10.1023/A:1008643705223
J. T. Williams, N. Murthi Anishetty, J. Konopka, Activities of the International Board for Plant Genetic Resources (IBPGR) World crops: Cool season food legumes. pp. 47- 51 ,(1988) , 10.1007/978-94-009-2764-3_6
Franklin A. Coffman, Oat History: Identification and Classification Technical Bulletins. ,(1977)
D. H. Smith, L. W. Briggle, D. M. Wesenberg, Germplasm Collection, Preservation, and Utilization Agronomy Monographs. pp. 793- 820 ,(2015) , 10.2134/AGRONMONOGR33.C22
M. A. Newell, D. Cook, N. A. Tinker, J.-L. Jannink, Population structure and linkage disequilibrium in oat (Avena sativa L.): Implications for genome-wide association studies Theoretical and Applied Genetics. ,vol. 122, pp. 623- 632 ,(2011) , 10.1007/S00122-010-1474-7
Yong‐Bi Fu, Gregory W. Peterson, Graham Scoles, Brian Rossnagel, Daniel J. Schoen, Ken W. Richards, Allelic Diversity Changes in 96 Canadian Oat Cultivars Released from 1886 to 2001 Crop Science. ,vol. 43, pp. 1989- 1995 ,(2003) , 10.2135/CROPSCI2003.1989