Systematic Classification of Disease Severity for Evaluation of Expanded Carrier Screening Panels

作者: Gabriel A. Lazarin , Felicia Hawthorne , Nicholas S. Collins , Elizabeth A. Platt , Eric A. Evans

DOI: 10.1371/JOURNAL.PONE.0114391

关键词: Carrier screeningIntellectual disabilityBioinformaticsDiseaseDisease severityDisease characteristicsHealth careIntensive care medicineMedicineGenetic counselingPilot testGeneral Biochemistry, Genetics and Molecular BiologyGeneral Agricultural and Biological SciencesGeneral Medicine

摘要: Professional guidelines dictate that disease severity is a key criterion for carrier screening. Expanded screening, which tests hundreds to thousands of mutations simultaneously, requires an objective, systematic means describing given disease's build screening panels. We hypothesized diseases with characteristics deemed be highest impact would likewise rated as most severe, and lower less severe. describe pilot test this hypothesis in we surveyed 192 health care professionals determine the specific phenotypic on perceived severity, asked same group rate selected inherited diseases. The results support hypothesis: identified four “Tiers” (1–4). Based these responses, developed algorithm that, based combination normally seen affected individual, classifies Profound, Severe, Moderate, or Mild. This allows simple classification replicable not labor intensive.

参考文章(9)
Iris Schrijver, Eneli Oitmaa, Andres Metspalu, Phyllis Gardner, Genotyping Microarray for the Detection of More Than 200 CFTR Mutations in Ethnically Diverse Populations The Journal of Molecular Diagnostics. ,vol. 7, pp. 375- 387 ,(2005) , 10.1016/S1525-1578(10)60567-3
Wayne W. Grody, Barry H. Thompson, Anthony R. Gregg, Lora H. Bean, Kristin G. Monaghan, Adele Schneider, Roger V. Lebo, ACMG position statement on prenatal/preconception expanded carrier screening Genetics in Medicine. ,vol. 15, pp. 482- 483 ,(2013) , 10.1038/GIM.2013.47
Gabriel A. Lazarin, Imran S. Haque, Shivani Nazareth, Kevin Iori, A. Scott Patterson, Jessica L. Jacobson, John R. Marshall, William K. Seltzer, Pasquale Patrizio, Eric A. Evans, Balaji S. Srinivasan, An empirical estimate of carrier frequencies for 400+ causal Mendelian variants: results from an ethnically diverse clinical sample of 23,453 individuals. Genetics in Medicine. ,vol. 15, pp. 178- 186 ,(2013) , 10.1038/GIM.2012.114
Joe H. Ward, Hierarchical Grouping to Optimize an Objective Function Journal of the American Statistical Association. ,vol. 58, pp. 236- 244 ,(1963) , 10.1080/01621459.1963.10500845
Anastasia Fedick, Jing Su, Chaim Jalas, Lesley Northrop, Batsal Devkota, Josef Ekstein, Nathan R. Treff, High-Throughput Carrier Screening Using TaqMan Allelic Discrimination PLoS ONE. ,vol. 8, pp. e59722- ,(2013) , 10.1371/JOURNAL.PONE.0059722
C. J. Bell, D. L. Dinwiddie, N. A. Miller, S. L. Hateley, E. E. Ganusova, J. Mudge, R. J. Langley, L. Zhang, C. C. Lee, F. D. Schilkey, V. Sheth, J. E. Woodward, H. E. Peckham, G. P. Schroth, R. W. Kim, S. F. Kingsmore, Carrier Testing for Severe Childhood Recessive Diseases by Next-Generation Sequencing Science Translational Medicine. ,vol. 3, ,(2011) , 10.1126/SCITRANSLMED.3001756
Jun Wang, Min Lin, Andrew Crenshaw, Amy Hutchinson, Belynda Hicks, Meredith Yeager, Sonja Berndt, Wen-Yi Huang, Richard B Hayes, Stephen J Chanock, Robert C Jones, Ramesh Ramakrishnan, High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays. BMC Genomics. ,vol. 10, pp. 561- 561 ,(2009) , 10.1186/1471-2164-10-561
Fabian Pedregosa, Gaël Varoquaux, Alexandre Gramfort, Vincent Michel, Bertrand Thirion, Olivier Grisel, Mathieu Blondel, Andreas Müller, Joel Nothman, Gilles Louppe, Peter Prettenhofer, Ron Weiss, Vincent Dubourg, Jake Vanderplas, Alexandre Passos, David Cournapeau, Matthieu Brucher, Matthieu Perrot, Édouard Duchesnay, Scikit-learn: Machine Learning in Python Journal of Machine Learning Research. ,vol. 12, pp. 2825- 2830 ,(2011)
Saroj Saigal, Barbara L Stoskopf, David Feeny, William Furlong, Elizabeth Burrows, Peter L Rosenbaum, Lorraine Hoult, Differences in Preferences for Neonatal Outcomes Among Health Care Professionals, Parents, and Adolescents JAMA. ,vol. 281, pp. 1991- 1997 ,(1999) , 10.1001/JAMA.281.21.1991