A chromosome-scale genome assembly of a diploid alfalfa, the progenitor of autotetraploid alfalfa.

作者: Ao Li , Ai Liu , Xin Du , Jin-Yuan Chen , Mou Yin

DOI: 10.1038/S41438-020-00417-7

关键词: GenomeGeneticsMedicago truncatulaReference genomeGeneSequence assemblyCaeruleaBiologyGenome sizeMedicago sativa

摘要: … The near-complete and accurate diploid alfalfa reference … to the recently assembled autotetraploid alfalfa genome and will … alfalfa as well as for improving breeding strategies in alfalfa. …

参考文章(80)
Roberto Lozano, Martha T Hamblin, Simon Prochnik, Jean-Luc Jannink, Identification and distribution of the NBS-LRR gene family in the Cassava genome BMC Genomics. ,vol. 16, pp. 360- 360 ,(2015) , 10.1186/S12864-015-1554-9
Adriana Miele, Job Dekker, Mapping cis- and trans- chromatin interaction networks using chromosome conformation capture (3C). Methods of Molecular Biology. ,vol. 464, pp. 105- 121 ,(2009) , 10.1007/978-1-60327-461-6_7
Enrique Blanco, Genís Parra, Roderic Guigó, Using geneid to identify genes. Current protocols in human genetics. ,vol. 64, ,(2003) , 10.1002/0471250953.BI0403S18
Douglas R Cook, Medicago truncatula — a model in the making! Current Opinion in Plant Biology. ,vol. 2, pp. 301- 304 ,(1999) , 10.1016/S1369-5266(99)80053-3
Gail Shadle, Fang Chen, M.S. Srinivasa Reddy, Lisa Jackson, Jin Nakashima, Richard A. Dixon, Down-regulation of hydroxycinnamoyl CoA: Shikimate hydroxycinnamoyl transferase in transgenic alfalfa affects lignification, development and forage quality Phytochemistry. ,vol. 68, pp. 1521- 1529 ,(2007) , 10.1016/J.PHYTOCHEM.2007.03.022
M. Stanke, O. Keller, I. Gunduz, A. Hayes, S. Waack, B. Morgenstern, AUGUSTUS: ab initio prediction of alternative transcripts Nucleic Acids Research. ,vol. 34, pp. 435- 439 ,(2006) , 10.1093/NAR/GKL200
Norman K. Matheson, Darryl M. Small, Les Copeland, β-d-mannanases in germinating lucerne (alfalfa) seeds Carbohydrate Research. ,vol. 82, pp. 325- 331 ,(1980) , 10.1016/S0008-6215(00)85706-7
Y. Wang, H. Tang, J. D. DeBarry, X. Tan, J. Li, X. Wang, T.-h. Lee, H. Jin, B. Marler, H. Guo, J. C. Kissinger, A. H. Paterson, MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity Nucleic Acids Research. ,vol. 40, ,(2012) , 10.1093/NAR/GKR1293
Zhipeng Liu, Tianlong Chen, Lichao Ma, Zhiguang Zhao, Patrick X. Zhao, Zhibiao Nan, Yanrong Wang, Global Transcriptome Sequencing Using the Illumina Platform and the Development of EST-SSR Markers in Autotetraploid Alfalfa PLoS ONE. ,vol. 8, pp. e83549- ,(2013) , 10.1371/JOURNAL.PONE.0083549