Assessment of reactivities with explicit and implicit solvent models: QM/MM and gas-phase evaluation of three different Ag-catalysed furan ring formation routes

作者: Péter Pál Fehér , András Stirling

DOI: 10.1039/C9NJ04003J

关键词: ChemistrySolvent modelsIntramolecular forceSolventQM/MMYield (chemistry)Computational chemistrySolvationMolecular dynamicsImplicit solvation

摘要: QM/MM molecular dynamics and static DFT calculations have been performed to evaluate free energy barriers reaction energies of a representative silver-catalyzed in DMF. The mechanism developed previous work revealed favorable intramolecular C–O coupling between terminal alkyne β-ketoester moieties yield furan ring three possible pathways were scrutinized within the framework SMD implicit solvation model. In this study we set out compare effect explicit on variations ring-closure step. feature different charge states with bonding topologies characteristic many silver- copper-catalyzed steps; hence they can serve as blueprint for assessing effects solvents wider reactions. Comparison results showed that both methodologies could unequivocally determine most well least likely pathway. Further analysis trajectories obtained from simulations indicated neither direct solvent participation nor any site-specific interaction reactant despite fact pairwise interactions solutes highly polar molecules are significant. These insights point sufficiently mobile, fluctuating shell which be efficiently substituted by models at fraction computational costs.

参考文章(38)
Jürg Hutter, Marcella Iannuzzi, Florian Schiffmann, Joost VandeVondele, cp2k: atomistic simulations of condensed matter systems Wiley Interdisciplinary Reviews: Computational Molecular Science. ,vol. 4, pp. 15- 25 ,(2014) , 10.1002/WCMS.1159
Guichun Fang, Xihe Bi, Silver-catalysed reactions of alkynes: recent advances Chemical Society Reviews. ,vol. 44, pp. 8124- 8173 ,(2015) , 10.1039/C5CS00027K
John P. Perdew, Kieron Burke, Matthias Ernzerhof, Generalized Gradient Approximation Made Simple Physical Review Letters. ,vol. 77, pp. 3865- 3868 ,(1996) , 10.1103/PHYSREVLETT.77.3865
Benedetta Mennucci, Continuum Solvation Models: What Else Can We Learn from Them? Journal of Physical Chemistry Letters. ,vol. 1, pp. 1666- 1674 ,(2010) , 10.1021/JZ100506S
C. Hartwigsen, S. Goedecker, J. Hutter, Relativistic separable dual-space Gaussian pseudopotentials from H to Rn Physical Review B. ,vol. 58, pp. 3641- 3662 ,(1998) , 10.1103/PHYSREVB.58.3641
Jacopo Tomasi, Benedetta Mennucci, Roberto Cammi, Quantum Mechanical Continuum Solvation Models Chemical Reviews. ,vol. 105, pp. 2999- 3094 ,(2005) , 10.1021/CR9904009
Joost VandeVondele, Jürg Hutter, Gaussian basis sets for accurate calculations on molecular systems in gas and condensed phases. Journal of Chemical Physics. ,vol. 127, pp. 114105- 114105 ,(2007) , 10.1063/1.2770708
Alexander D. MacKerell, Joanna Wiorkiewicz-Kuczera, Martin Karplus, An all-atom empirical energy function for the simulation of nucleic acids Journal of the American Chemical Society. ,vol. 117, pp. 11946- 11975 ,(1995) , 10.1021/JA00153A017
Aleksandr V. Marenich, Christopher J. Cramer, Donald G. Truhlar, Universal solvation model based on solute electron density and on a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions. Journal of Physical Chemistry B. ,vol. 113, pp. 6378- 6396 ,(2009) , 10.1021/JP810292N
Joost VandeVondele, Matthias Krack, Fawzi Mohamed, Michele Parrinello, Thomas Chassaing, Jürg Hutter, QUICKSTEP: Fast and accurate density functional calculations using a mixed Gaussian and plane waves approach Computer Physics Communications. ,vol. 167, pp. 103- 128 ,(2005) , 10.1016/J.CPC.2004.12.014