The biphenyl/polychlorinated biphenyl-degradation locus (bph) of Pseudomonas sp. LB400 encodes four additional metabolic enzymes.

作者: Bernd Hofer , Silke Backhaus , Kenneth N. Timmis

DOI: 10.1016/0378-1119(94)90196-1

关键词: EnzymeDNAAldolase ABiphenylGeneAmino acidBiologyOperonStructural geneBiochemistry

摘要: Abstract The bph locus of Pseudomonas sp. LB400, encoding biphenyl/polychlorinated biphenyl (PCB) degradation, contains a region about 3.5 kb hitherto unknown function, between bphC and bphD. This DNA segment has now been characterized. Four structural genes have located identified by combination expression cloning, enzyme activity tests sequencing. four closely spaced cistrons (bphKHJI) glutathione S-transferase (GST), 2-hydroxypenta-2,4-dienoate hydratase, an acetaldehyde dehydrogenase (acylating) 4-hydroxy-2-oxovalerate aldolase, respectively. latter three are enzymes required for conversion the aliphatic end product bphABCD-encoded catabolism biphenyls to Krebs cycle intermediates. discovery these provides rationale growth strain on chlorinated which yield benzoates as dead-end metabolites. sequences involved 54–71% identical those homologous encoded dmp xyl operons. role GST in degradation is less clear, but since it was found contain, putative xenobiotic substrate-binding domain, shares 29% amino acids with bacterial tetrachlorohydroquinone dehalogenase, may be dehalogenation PCB-degradative

参考文章(49)
D. Catelani, C. Sorlini, V. Treccani, The metabolism of biphenyl by Pseudomonas putida. Cellular and Molecular Life Sciences. ,vol. 27, pp. 1173- 1174 ,(1971) , 10.1007/BF02286908
Kazunari Taira, Nobuki Hayase, Nariaki Arimura, Shigeki Yamashita, Toshitsugu Miyazaki, Kensuke Furukawa, Cloning and nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene from the PCB-degrading strain of Pseudomonas paucimobilis Q1 Biochemistry. ,vol. 27, pp. 3990- 3996 ,(1988) , 10.1021/BI00411A015
Bernd Hofer, Lindsay D. Eltis, David N. Dowling, Kenneth N. Timmis, Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation. Gene. ,vol. 130, pp. 47- 55 ,(1993) , 10.1016/0378-1119(93)90345-4
R. Saiki, D. Gelfand, S Stoffel, S. Scharf, R Higuchi, G. Horn, K. Mullis, H. Erlich, Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase Science. ,vol. 239, pp. 487- 491 ,(1988) , 10.1126/SCIENCE.2448875
Giuseppina MIGNOGNA, Nerino ALLOCATI, Antonio ACETO, Raffaele PICCOLOMINI, Carmine ILIO, Donatella BARRA, Filippo MARTINI, The amino acid sequence of glutathione transferase from Proteus mirabilis, a prototype of a new class of enzymes FEBS Journal. ,vol. 211, pp. 421- 425 ,(1993) , 10.1111/J.1432-1033.1993.TB17566.X
S. Tabor, C. C. Richardson, A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes Proceedings of the National Academy of Sciences of the United States of America. ,vol. 82, pp. 1074- 1078 ,(1985) , 10.1073/PNAS.82.4.1074
D. F. Feng, M. S. Johnson, R. F. Doolittle, Aligning amino acid sequences: Comparison of commonly used methods Journal of Molecular Evolution. ,vol. 21, pp. 112- 125 ,(1985) , 10.1007/BF02100085