Functional and small-angle X-ray scattering studies of a new stationary phase survival protein E (SurE) from Xylella fastidiosa - evidence of allosteric behaviour.

作者: Antonio M. Saraiva , Marcelo A. Reis , Susely F. Tada , Luciana K. Rosselli-Murai , Dilaine R. S. Schneider

DOI: 10.1111/J.1742-4658.2009.07390.X

关键词: BiochemistryTetramerNucleotidaseOpen reading frameORFSBiologyCooperative bindingProtein secondary structureGeneAllosteric regulation

摘要: The genome data of bacterium Xylella fastidiosa strain 9a5c has identified several orfs related to its phytopathogenic adaptation and survival. Among these genes, the surE codifies a survival protein E (XfSurE) whose function is not so well understood, but functional assays in Escherichia coli revealed nucleotidase exopolyphosphate activity. In present study, we report XfSurE overexpression E. coli purification. overall secondary structure was analyzed by CD. Small-angle X-ray scattering gel filtration techniques demonstrated that oligomeric state solution tetramer. addition, kinetics experiments were carried out with monophosphate nucleoside substrates highly positive cooperativity. An allosteric mechanism involving torsion movements proposed explain cooperative behaviour XfSurE. This first characterization SurE enzyme from phytopathogen organism and, our knowledge, be described. Structured digital abstract •  MINT-7262492: (uniprotkb:Q9PF20) bind (MI:0407) x ray (MI:0826) •  MINT-7262504: molecular sieving (MI:0071)

参考文章(51)
A.S. Bretonnet, L.P. Jordheim, C. Dumontet, J.M. Lancelin, Regulation and activity of cytosolic 5′-nucleotidase II FEBS Letters. ,vol. 579, pp. 3363- 3368 ,(2005) , 10.1016/J.FEBSLET.2005.05.014
David W. Deerfield, Hugh B. Nicholas, Karl B. Nicholas, GeneDoc: Analysis and visualization of genetic variation ,(1997)
Jae Young Lee, Jae Eun Kwak, Jinho Moon, Soo Hyun Eom, Elaine C. Liong, Jean-Denis Pedelacq, Joel Berendzen, Se Won Suh, Crystal structure and functional analysis of the SurE protein identify a novel phosphatase family. Nature Structural & Molecular Biology. ,vol. 8, pp. 789- 794 ,(2001) , 10.1038/NSB0901-789
J Spychała, V Madrid-Marina, I H Fox, High Km soluble 5'-nucleotidase from human placenta. Properties and allosteric regulation by IMP and ATP. Journal of Biological Chemistry. ,vol. 263, pp. 18759- 18765 ,(1988) , 10.1016/S0021-9258(18)37348-4
R.-G. Zhang, T. Skarina, J.E. Katz, S. Beasley, A. Khachatryan, S. Vyas, C.H. Arrowsmith, S. Clarke, A. Edwards, A. Joachimiak, A. Savchenko, Structure of Thermotoga maritima Stationary Phase Survival Protein SurE: A Novel Acid Phosphatase Structure. ,vol. 9, pp. 1095- 1106 ,(2001) , 10.1016/S0969-2126(01)00675-X
Glatter O, Kratky O, Pilz I, Small Angle X-Ray Scattering ,(1982)
Andrew John George Simpson, Fernando de Castro Reinach, Pea Arruda, FA d Abreu, Marcio Acencio, Renato Alvarenga, LM Carareto Alves, Jorge Enrique Araya, Gilson Soares Baia, CS Baptista, MH Barros, ED Bonaccorsi, S Bordin, JM Bove, MRS Briones, MRP Bueno, AA Camargo, LEA Camargo, DM Carraro, H Carrer, NB Colauto, C Colombo, FF Costa, MCR Costa, CM Costa-Neto, LL Coutinho, M Cristofani, E Dias-Neto, C Docena, H El-Dorry, AP Facincani, AJS Ferreira, VCA Ferreira, JA Ferro, JS Fraga, SC Franca, MC Franco, M Frohme, LR Furlan, M Garnier, GH Goldman, MHS Goldman, SL Gomes, A Gruber, PL Ho, JD Hoheisel, ML Junqueira, EL Kemper, JP Kitajima, JE Krieger, EE Kuramae, F Laigret, MR Lambais, LCC Leite, EGM Lemos, MVF Lemos, SA Lopes, CR Lopes, JA Machado, MA Machado, AMBN Madeira, HMF Madeira, CL Marino, MV Marques, EAL Martins, EMF Martins, AY Matsukuma, CFM Menck, EC Miracca, CY Miyaki, CB Monteiro-Vitorello, DH Moon, MA Nagai, ALTO Nascimento, LES Netto, A Nhani Jr, FG Nobrega, LR Nunes, MA Oliveira, MC De Oliveira, RC De Oliveira, DA Palmieri, A Paris, BR Peixoto, GAG Pereira, HA Pereira Jr, JB Pesquero, RB Quaggio, PG Roberto, V Rodrigues, AJ De M. Rosa, VE de Rosa Jr, RG De Sá, RV Santelli, HE Sawasaki, ACR Da Silva, AM Da Silva, FR Da Silva, WA Silva, JF Da Silveira, MLZ Silvestri, WJ Siqueira, AA De Souza, AP De Souza, MF Terenzi, D Truffi, SM Tsai, MH Tsuhako, H Vallada, MA Van Sluys, S Verjovski-Almeida, AL Vettore, MA Zago, M Zatz, J Meidanis, JC Setubal, None, The genome sequence of the plant pathogen Xylella fastidiosa Nature. ,vol. 406, pp. 151- 157 ,(2000) , 10.1038/35018003
C Li, J K Ichikawa, J J Ravetto, H C Kuo, J C Fu, S Clarke, A new gene involved in stationary-phase survival located at 59 minutes on the Escherichia coli chromosome. Journal of Bacteriology. ,vol. 176, pp. 6015- 6022 ,(1994) , 10.1128/JB.176.19.6015-6022.1994
Roichi Itoh, Chikako Usami, Tomoko Nishino, Keizo Tsushima, None, Kinetic properties of cytosol 5'-nucleotidase from chicken liver. Biochimica et Biophysica Acta. ,vol. 526, pp. 154- 162 ,(1978) , 10.1016/0005-2744(78)90300-5
Peter Reichard, Interactions Between Deoxyribonucleotide and DNA Synthesis Annual Review of Biochemistry. ,vol. 57, pp. 349- 374 ,(1988) , 10.1146/ANNUREV.BI.57.070188.002025