Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes

作者: Ken Kurokawa , Takehiko Itoh , Tomomi Kuwahara , Kenshiro Oshima , Hidehiro Toh

DOI: 10.1093/DNARES/DSM018

关键词: Orphan geneMicrobiomeGeneticsGeneHorizontal gene transferGenomicsGut floraGene familyMetagenomicsBiology

摘要: … them, we performed a large-scale comparative metagenomic … which are lacking in the human host and, thus, can be … number of genes in our metasequences by false prediction and/…

参考文章(50)
Jason M. Ridlon, Sean E. Mcgarr, Phillip B. Hylemon, Diet, anaerobic bacterial metabolism, and colon cancer: a review of the literature. Journal of Clinical Gastroenterology. ,vol. 39, pp. 98- 109 ,(2005)
Charles Elkan, Timothy L. Bailey, Fitting a mixture model by expectation maximization to discover motifs in biopolymers. intelligent systems in molecular biology. ,vol. 2, pp. 28- 36 ,(1994)
Hiroyasu Esumi, Keiji Wakabayashi, Takashi Sugimura, Minako Nagao, Food-derived Mutagens and Carcinogens Cancer Research. ,vol. 52, ,(1992)
Glenn R. Gibson, Marcel B. Roberfroid, Dietary Modulation of the Human Colonic Microbiota: Introducing the Concept of Prebiotics Journal of Nutrition. ,vol. 125, pp. 1401- 1412 ,(1995) , 10.1093/JN/125.6.1401
Y Benno, K Endo, T Mizutani, Y Namba, T Komori, T Mitsuoka, Comparison of fecal microflora of elderly persons in rural and urban areas of Japan. Applied and Environmental Microbiology. ,vol. 55, pp. 1100- 1105 ,(1989) , 10.1128/AEM.55.5.1100-1105.1989
C. Tancrède, Role of human microflora in health and disease. European Journal of Clinical Microbiology & Infectious Diseases. ,vol. 11, pp. 1012- 1015 ,(1992) , 10.1007/BF01967791
S. B. Beres, E. W. Richter, M. J. Nagiec, P. Sumby, S. F. Porcella, F. R. DeLeo, J. M. Musser, Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 7059- 7064 ,(2006) , 10.1073/PNAS.0510279103
Fredrik Backhed, Ruth E Ley, Justin L Sonnenburg, Daniel A Peterson, Jeffrey I Gordon, Host-Bacterial Mutualism in the Human Intestine Science. ,vol. 307, pp. 1915- 1920 ,(2005) , 10.1126/SCIENCE.1104816
Thomas T MacDonald, Giovanni Monteleone, Immunity, Inflammation, and Allergy in the Gut Science. ,vol. 307, pp. 1920- 1925 ,(2005) , 10.1126/SCIENCE.1106442