The global distribution and evolution of deoxyribonucleoside kinases in bacteria

作者: Anke Konrad , Ekaterina Yarunova , Tinkara Tinta , Jure Piškur , David A. Liberles

DOI: 10.1016/J.GENE.2011.10.039

关键词: BacteriaDNABacterial genome sizeBiologyGene familyPhylogeneticsHorizontal gene transferGeneticsGeneGene duplication

摘要: Deoxyribonucleoside kinases (dNKs) are important to DNA metabolism, especially in environments where nucleosides freely available be absorbed and used for the salvage pathway. Little has previously been known about complement of dNKs different bacterial genomes. However, it was believed that Gram-negative bacteria had a single dNK, while Gram-positive possessed several. An analysis 992 fully sequenced genomes, including both organisms, conducted investigate phylogenetic relationship all TK1-like non-TK1-like dNKs. It illustrated gene families evolved through number duplications horizontal transfers, leading presence multiple types bacteria. The findings this study provide backbone further studies into evolution interplay between de novo pathways synthesis with respect environmental availability deoxyribonucleosides metabolic processes generating provisions dNTPs.

参考文章(22)
David H. Ives, Seiichiro Ikeda, Life on the Salvage Path: The Deoxynucleoside Kinases of Lactobacillus acidophilus R-26 Progress in Nucleic Acid Research and Molecular Biology. ,vol. 59, pp. 205- 255 ,(1997) , 10.1016/S0079-6603(08)61033-8
M. P. B. Sandrini, A. R. Clausen, B. Munch-Petersen, J. Piškur, Thymidine kinase diversity in bacteria. Nucleosides, Nucleotides & Nucleic Acids. ,vol. 25, pp. 1153- 1158 ,(2006) , 10.1080/15257770600894469
Ann-Charlotte Berglund-Sonnhammer, Pär Steffansson, Matthew J. Betts, David A. Liberles, Optimal gene trees from sequences and species trees using a soft interpretation of parsimony. Journal of Molecular Evolution. ,vol. 63, pp. 240- 250 ,(2006) , 10.1007/S00239-005-0096-1
MF DeFlaun, JH Paul, WH Jeffrey, Distribution and Molecular Weight of Dissolved DNA in Subtropical Estuarine and Oceanic Environments Marine Ecology Progress Series. ,vol. 38, pp. 65- 73 ,(1987) , 10.3354/MEPS038065
S. Eriksson, B. Munch-Petersen, K. Johansson, H. Ecklund, Structure and function of cellular deoxyribonucleoside kinases. Cellular and Molecular Life Sciences. ,vol. 59, pp. 1327- 1346 ,(2002) , 10.1007/S00018-002-8511-X
Marcella McClure, Evolution of the DUT Gene: Horizontal Transfer between Host and Pathogen in all Three Domains of Life Current Protein & Peptide Science. ,vol. 2, pp. 313- 324 ,(2001) , 10.2174/1389203013381062
Hiroyuki Kamiya, Hiroshi Ochiai, Hideyoshi Harashima, Mana Ito, Akira Matsuda, Transient expression of Drosophila melanogaster deoxynucleoside kinase gene enhances cytotoxicity of nucleoside analogs. Nucleosides, Nucleotides & Nucleic Acids. ,vol. 25, pp. 553- 560 ,(2006) , 10.1080/15257770600685784
S Altschula, Warren Gisha, Webb Millerb, E Meyersc, D Lipmana, None, Basic Local Alignment Search Tool Journal of Molecular Biology. ,vol. 215, pp. 403- 410 ,(1990) , 10.1016/S0022-2836(05)80360-2
Tinkara Tinta, Louise Slot Christiansen, Anke Konrad, David A. Liberles, Valentina Turk, Birgitte Munch-Petersen, Jure Piškur, Anders R. Clausen, Deoxyribonucleoside kinases in two aquatic bacteria with high specificity for thymidine and deoxyadenosine Fems Microbiology Letters. ,vol. 331, pp. 120- 127 ,(2012) , 10.1111/J.1574-6968.2012.02565.X