Middle-down proteomics: a still unexploited resource for chromatin biology.

作者: Simone Sidoli , Benjamin A. Garcia

DOI: 10.1080/14789450.2017.1345632

关键词: ProteomicsBiologyEpigeneticsHistone codeChromatinComputational biologyDNAHistoneEnhancerGeneticsEpigenomics

摘要: … applied to histones, which consists in the analysis of intact histone N… This idea was strengthened by the discovery of histone-… the histone reader TAF1 (double bromodomain), the …

参考文章(80)
Leann M. Mikesh, Beatrix Ueberheide, An Chi, Joshua J. Coon, John E.P. Syka, Jeffrey Shabanowitz, Donald F. Hunt, The utility of ETD mass spectrometry in proteomic analysis. Biochimica et Biophysica Acta. ,vol. 1764, pp. 1811- 1822 ,(2006) , 10.1016/J.BBAPAP.2006.10.003
David M. Horn, Roman A. Zubarev, Fred W. McLafferty, Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules. Journal of the American Society for Mass Spectrometry. ,vol. 11, pp. 320- 332 ,(2000) , 10.1016/S1044-0305(99)00157-9
Andrey Tvardovskiy, Krzysztof Wrzesinski, Simone Sidoli, Stephen J. Fey, Adelina Rogowska-Wrzesinska, Ole N. Jensen, Top-down and middle-down protein analysis reveals that intact and clipped human histones differ in post-translational modification patterns Molecular & Cellular Proteomics. ,vol. 14, pp. 3142- 3153 ,(2015) , 10.1074/MCP.M115.048975
Michael J. Sweredoski, Annie Moradian, Matthias Raedle, Catarina Franco, Sonja Hess, High Resolution Parallel Reaction Monitoring with Electron Transfer Dissociation for Middle-Down Proteomics Analytical Chemistry. ,vol. 87, pp. 8360- 8366 ,(2015) , 10.1021/ACS.ANALCHEM.5B01542
Özlem Önder, Simone Sidoli, Martin Carroll, Benjamin A Garcia, Progress in epigenetic histone modification analysis by mass spectrometry for clinical investigations. Expert Review of Proteomics. ,vol. 12, pp. 499- 517 ,(2015) , 10.1586/14789450.2015.1084231
Simone Sidoli, Julien Vandamme, Anna Elisabetta Salcini, Ole N. Jensen, Dynamic changes of histone H3 marks during Caenorhabditis elegans lifecycle revealed by middle‐down proteomics Proteomics. ,vol. 16, pp. 459- 464 ,(2016) , 10.1002/PMIC.201500285
David Shechter, Holger L Dormann, C David Allis, Sandra B Hake, Extraction, purification and analysis of histones. Nature Protocols. ,vol. 2, pp. 1445- 1457 ,(2007) , 10.1038/NPROT.2007.202
Wolfgang Fischle, Yanming Wang, C David Allis, Histone and chromatin cross-talk Current Opinion in Cell Biology. ,vol. 15, pp. 172- 183 ,(2003) , 10.1016/S0955-0674(03)00013-9
Alexander Lex, Nils Gehlenborg, Hendrik Strobelt, Romain Vuillemot, Hanspeter Pfister, UpSet: Visualization of Intersecting Sets. IEEE Transactions on Visualization and Computer Graphics. ,vol. 20, pp. 1983- 1992 ,(2014) , 10.1109/TVCG.2014.2346248