‘Closing the loop’ in biological systems modeling — From the in silico to the in vitro

作者: Alexandros Kiparissides , Michalis Koutinas , Cleo Kontoravdi , Athanasios Mantalaris , Efstratios N. Pistikopoulos

DOI: 10.1016/J.AUTOMATICA.2011.01.013

关键词: Experimental validationBiological modelingIn silicoComputer scienceMathematical modelLOOP (programming language)Systems engineeringSystems modelingClosing (morphology)Work (electrical)

摘要: This work presents a holistic 'closed loop' approach for the development of models biological systems. The ever-increasing availability experimental information necessitates advancement systematic methodology to organise and utilise these data. Herein, we present model building framework that maps treatment from initial conception model, through its validation finally application in model-based optimisation studies. We highlight discuss current issues associated with mathematical systems share our perspective towards will facilitate control vitro silico.

参考文章(50)
E. Walter, Identifiability of parametric models Pergamon Press, Inc.. ,(1987)
Weichang Zhou, Weichang Zhou, Jutta Rehm, Anna Europa, Wei-Shou Hu, Alteration of mammalian cell metabolism by dynamic nutrient feeding. Cytotechnology. ,vol. 24, pp. 99- 108 ,(1997) , 10.1023/A:1007945826228
Axel Munack, Clemens Posten, Design of Optimal Dynamical Experiments for Parameter Estimation american control conference. pp. 2010- 2016 ,(1989) , 10.23919/ACC.1989.4790520
Carolyn M. Lam, Kansuporn Sriyudthsak, Cleo Kontoravdi, Krunal Kothari, Hee-Ho Park, Efstratios N. Pistikopoulos, Athanasios Mantalaris, Cell cycle modelling for off-line dynamic optimisation of mammalian cultures Computer-aided chemical engineering. ,vol. 25, pp. 109- 114 ,(2008) , 10.1016/S1570-7946(08)80023-5
Gregory D. Sayles, Mina Dalili, David F. Ollis, Glutamine-limited batch hybridoma growth and antibody production: experiment and model. Biotechnology and Bioengineering. ,vol. 36, pp. 74- 82 ,(1990) , 10.1002/BIT.260360110
Zhenya Jia, Marianthi G. Ierapetritou, Short-Term Scheduling under Uncertainty Using MILP Sensitivity Analysis Industrial & Engineering Chemistry Research. ,vol. 43, pp. 3782- 3791 ,(2004) , 10.1021/IE0306731
Fabio R. Sidoli, Athanasios Mantalaris, Steven P. Asprey, Toward Global Parametric Estimability of a Large-Scale Kinetic Single-Cell Model for Mammalian Cell Cultures Industrial & Engineering Chemistry Research. ,vol. 44, pp. 868- 878 ,(2005) , 10.1021/IE0401556
Vivian M. deZengotita, William M. Miller, John G. Aunins, Weichang Zhou, Phosphate feeding improves high-cell-concentration NS0 myeloma culture performance for monoclonal antibody production Biotechnology and Bioengineering. ,vol. 69, pp. 566- 576 ,(2000) , 10.1002/1097-0290(20000905)69:5<566::AID-BIT11>3.0.CO;2-4