Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung

作者: Neha Garg , Mingxun Wang , Embriette Hyde , Ricardo R. da Silva , Alexey V. Melnik

DOI: 10.1016/J.CHOM.2017.10.001

关键词: Context (language use)CartographyMetabolomeMolecular networkingHuman lungMicrobiomeMetabolomicsBase sequenceBiologyRNA RIBOSOMAL 16S

摘要: … Thus, visualization and cross-correlation between the microbiome via 16S rRNA amplicon or metagenome sequencing and the molecular profile via metabolomics will allow us to …

参考文章(38)
José A. Navas-Molina, Juan M. Peralta-Sánchez, Antonio González, Paul J. McMurdie, Yoshiki Vázquez-Baeza, Zhenjiang Xu, Luke K. Ursell, Christian Lauber, Hongwei Zhou, Se Jin Song, James Huntley, Gail L. Ackermann, Donna Berg-Lyons, Susan Holmes, J. Gregory Caporaso, Rob Knight, Advancing our understanding of the human microbiome using QIIME Methods in Enzymology. ,vol. 531, pp. 371- 444 ,(2013) , 10.1016/B978-0-12-407863-5.00019-8
M. S. Donia, M. A. Fischbach, Small molecules from the human microbiota Science. ,vol. 349, pp. 1254766- 1254766 ,(2015) , 10.1126/SCIENCE.1254766
Peter Jorth, Benjamin J. Staudinger, Xia Wu, Katherine B. Hisert, Hillary Hayden, Jayanthi Garudathri, Christopher L. Harding, Matthew C. Radey, Amir Rezayat, Gilbert Bautista, William R. Berrington, Amanda F. Goddard, Chunxiang Zheng, Angus Angermeyer, Mitchell J. Brittnacher, Jacob Kitzman, Jay Shendure, Corinne L. Fligner, John Mittler, Moira L. Aitken, Colin Manoil, James E. Bruce, Timothy L. Yahr, Pradeep K. Singh, Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs. Cell Host & Microbe. ,vol. 18, pp. 307- 319 ,(2015) , 10.1016/J.CHOM.2015.07.006
Stephan Heeb, Matthew P Fletcher, Siri Ram Chhabra, Stephen P Diggle, Paul Williams, Miguel Cámara, None, Quinolones: from antibiotics to autoinducers Fems Microbiology Reviews. ,vol. 35, pp. 247- 274 ,(2011) , 10.1111/J.1574-6976.2010.00247.X
Kate L. Ormerod, Narelle M. George, James A. Fraser, Claire Wainwright, Philip Hugenholtz, Comparative genomics of non-pseudomonal bacterial species colonising paediatric cystic fibrosis patients. PeerJ. ,vol. 3, ,(2015) , 10.7717/PEERJ.1223
E. E. Smith, D. G. Buckley, Z. Wu, C. Saenphimmachak, L. R. Hoffman, D. A. D'Argenio, S. I. Miller, B. W. Ramsey, D. P. Speert, S. M. Moskowitz, J. L. Burns, R. Kaul, M. V. Olson, Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 8487- 8492 ,(2006) , 10.1073/PNAS.0602138103
S. P. Conway, K. G. Brownlee, M. Denton, D. G. Peckham, Antibiotic treatment of multidrug-resistant organisms in cystic fibrosis. American journal of respiratory medicine : drugs, devices, and other interventions. ,vol. 2, pp. 321- 332 ,(2003) , 10.1007/BF03256660
François Lépine, Sylvain Milot, Eric Déziel, Jianxin He, Laurence G. Rahme, Electrospray/mass spectrometric identification and analysis of 4-hydroxy-2-alkylquinolines (HAQs) produced by Pseudomonas aeruginosa Journal of the American Society for Mass Spectrometry. ,vol. 15, pp. 862- 869 ,(2004) , 10.1016/J.JASMS.2004.02.012
Ahmad Mohammad Abdel-Mawgoud, François Lépine, Eric Déziel, Rhamnolipids: diversity of structures, microbial origins and roles Applied Microbiology and Biotechnology. ,vol. 86, pp. 1323- 1336 ,(2010) , 10.1007/S00253-010-2498-2
Julia Oh, Allyson L Byrd, Clay Deming, Sean Conlan, Heidi H Kong, Julia A Segre, None, Biogeography and individuality shape function in the human skin metagenome Nature. ,vol. 514, pp. 59- 64 ,(2014) , 10.1038/NATURE13786