A structural insight into the inhibitory mechanism of an orally active PI3K/mTOR dual inhibitor, PKI-179 using computational approaches

作者: Mohd Rehan

DOI: 10.1016/J.JMGM.2015.10.005

关键词: In vivoIn vitroPharmacologyDocking (molecular)Dual inhibitorChemistryAccessible surface areaProtein kinase BBiochemistryPI3K/AKT/mTOR pathwayInhibitory postsynaptic potential

摘要: The PI3K/AKT/mTOR signaling pathway has been identified as an important target for cancer therapy. Attempts are increasingly made to design the inhibitors against key proteins of this anti-cancer PI3K/mTOR dual have proved more effective than only single protein targets. Recently discovered PKI-179, orally compound, is one such inhibitor targeting both PI3K and mTOR. This compound efficacious in vitro vivo. However, binding mechanisms molecular interactions PKI-179 with mTOR not yet available. current study investigated exact mode PI3Kγ using docking (un)binding simulation analyses. interacting residues their importance was ranked by loss accessible surface area, number residue, consistent appearance residue analysis. involved were Ala-805 Ile-2163 they lost maximum area due binding. In addition, which played a role drug but away from catalytic site also Finally, comparison respective sites done difference two proteins. Thus, pairs falling at similar location respect docked identified. striking similarity explains concomitant inhibition inhibitors. conclusion, analyses will provide suitable multi-target model studying drug-protein thus help designing novel drugs higher potency.

参考文章(48)
Bryan Hennessy, Mark Carey, Gordon B. Mills, Roshan Agarwal, PI3K pathway-directed therapeutic strategies in cancer. Current opinion in investigational drugs. ,vol. 11, pp. 615- 628 ,(2010)
W. L. Delano, The PyMOL Molecular Graphics System DeLano Scientific. ,(2002)
Todd J.A. Ewing, Shingo Makino, A. Geoffrey Skillman, Irwin D. Kuntz, DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases Journal of Computer-aided Molecular Design. ,vol. 15, pp. 411- 428 ,(2001) , 10.1023/A:1011115820450
Helena Pópulo, José Manuel Lopes, Paula Soares, The mTOR signalling pathway in human cancer. International Journal of Molecular Sciences. ,vol. 13, pp. 1886- 1918 ,(2012) , 10.3390/IJMS13021886
Yekaterina Y. Zaytseva, Joseph D. Valentino, Pat Gulhati, B. Mark Evers, mTOR inhibitors in cancer therapy Cancer Letters. ,vol. 319, pp. 1- 7 ,(2012) , 10.1016/J.CANLET.2012.01.005
Renxiao Wang, Yipin Lu, Shaomeng Wang, Comparative evaluation of 11 scoring functions for molecular docking. Journal of Medicinal Chemistry. ,vol. 46, pp. 2287- 2303 ,(2003) , 10.1021/JM0203783
Jeffrey A. Engelman, Targeting PI3K signalling in cancer: opportunities, challenges and limitations Nature Reviews Cancer. ,vol. 9, pp. 550- 562 ,(2009) , 10.1038/NRC2664
Bart Vanhaesebroeck, Sally J. Leevers, George Panayotou, Michael D. Waterfield, Phosphoinositide 3-kinases: a conserved family of signal transducers. Trends in Biochemical Sciences. ,vol. 22, pp. 267- 272 ,(1997) , 10.1016/S0968-0004(97)01061-X
Lisa M. Ballou, Richard Z. Lin, Rapamycin and mTOR kinase inhibitors Journal of Chemical Biology. ,vol. 1, pp. 27- 36 ,(2008) , 10.1007/S12154-008-0003-5
Pixu Liu, Hailing Cheng, Thomas M. Roberts, Jean J. Zhao, Targeting the phosphoinositide 3-kinase pathway in cancer Nature Reviews Drug Discovery. ,vol. 8, pp. 627- 644 ,(2009) , 10.1038/NRD2926