Using TESS to predict transcription factor binding sites in DNA sequence.
作者： Jonathan Schug
DOI: 10.1002/0471250953.BI0206S21
关键词: Genetics 、 E-box 、 Promoter 、 CAAT box 、 Response element 、 Enhancer 、 General transcription factor 、 DNA binding site 、 Biology 、 TRANSFAC
摘要: … predictions is that they need careful experimental verification. A strong prediction probably means that the factor is likely to bind to … More confidence can be assigned to a site by showing …
sci-hub.se 参考文章(8)
Tim Fitzwater, Barry Polisky, A SELEX primer. Methods in Enzymology. ,vol. 267, pp. 275- 301 ,(1996) , 10.1016/S0076-6879(96)67019-0
Scott Schwartz, Zheng Zhang, Kelly A Frazer, Arian Smit, Cathy Riemer, John Bouck, Richard Gibbs, Ross Hardison, Webb Miller, PipMaker—A Web Server for Aligning Two Genomic DNA Sequences Genome Research. ,vol. 10, pp. 577- 586 ,(2000) , 10.1101/GR.10.4.577
Kerstin Quandt, Kornelie Frech, Holger Karas, Edgar Wingender, Thomas Werner, MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Research. ,vol. 23, pp. 4878- 4884 ,(1995) , 10.1093/NAR/23.23.4878
William H.E. Day, F.R. McMorris, Critical comparison of consensus methods for molecular sequences Nucleic Acids Research. ,vol. 20, pp. 1093- 1099 ,(1992) , 10.1093/NAR/20.5.1093
W. J. Kent, C. W. Sugnet, T. S. Furey, K. M. Roskin, T. H. Pringle, A. M. Zahler, a. D. Haussler, The Human Genome Browser at UCSC Genome Research. ,vol. 12, pp. 996- 1006 ,(2002) , 10.1101/GR.229102
Edgar Wingender, Xin Chen, Ellen Fricke, Robert Geffers, Reinhard Hehl, Ines Liebich, Mathias Krull, Volker Matys, Holger Michael, R Ohnhäuser, M Prüß, Frank Schacherer, Susanne Thiele, Serge Urbach, The TRANSFAC system on gene expression regulation. Nucleic Acids Research. ,vol. 29, pp. 281- 283 ,(2001) , 10.1093/NAR/29.1.281
Lincoln D Stein, Christopher Mungall, ShengQiang Shu, Michael Caudy, Marco Mangone, Allen Day, Elizabeth Nickerson, Jason E Stajich, Todd W Harris, Adrian Arva, Suzanna Lewis, The Generic Genome Browser: A Building Block for a Model Organism System Database Genome Research. ,vol. 12, pp. 1599- 1610 ,(2002) , 10.1101/GR.403602
Dominique Vlieghe, Albin Sandelin, Pieter J De Bleser, Kris Vleminckx, Wyeth W Wasserman, Frans Van Roy, Boris Lenhard, A new generation of JASPAR, the open-access repository for transcription factor binding site profiles Nucleic Acids Research. ,vol. 34, pp. 95- 97 ,(2006) , 10.1093/NAR/GKJ115