Genomics and outbreak investigation: from sequence to consequence

作者: Esther R Robinson , Timothy M Walker , Mark J Pallen

DOI: 10.1186/GM440

关键词: Clinical PracticeInfectious Disease EpidemiologyBioinformaticsOutbreakGenomicsSequence (medicine)Antimicrobial susceptibilityBiologyComputational biologyClinical microbiology

摘要: … of outbreaks, focusing on the application of whole-genome sequencing (WGS) to outbreaks … can be informative at multiple steps in outbreak investigation, as evidenced by many recent …

参考文章(61)
Robert W. Shafer, Rationale and Uses of a Public HIV Drug-Resistance Database The Journal of Infectious Diseases. ,vol. 194, ,(2006) , 10.1086/505356
B Rump, C Cornelis, F Woonink, M Verweij, The need for ethical reflection on the use of molecular microbial characterisation in outbreak management. Eurosurveillance. ,vol. 18, pp. 20384- ,(2013) , 10.2807/ESE.18.04.20384-EN
Udo Buchholz, Helen Bernard, Dirk Werber, Merle M. Böhmer, Cornelius Remschmidt, Hendrik Wilking, Yvonne Deleré, Matthias an der Heiden, Cornelia Adlhoch, Johannes Dreesman, Joachim Ehlers, Steen Ethelberg, Mirko Faber, Christina Frank, Gerd Fricke, Matthias Greiner, Michael Höhle, Sofie Ivarsson, Uwe Jark, Markus Kirchner, Judith Koch, Gérard Krause, Petra Luber, Bettina Rosner, Klaus Stark, Michael Kühne, German Outbreak of Escherichia coli O104:H4 Associated with Sprouts The New England Journal of Medicine. ,vol. 365, pp. 1763- 1770 ,(2011) , 10.1056/NEJMOA1106482
Christina Frank, Dirk Werber, Jakob P Cramer, Mona Askar, Mirko Faber, Matthias an der Heiden, Helen Bernard, Angelika Fruth, Rita Prager, Anke Spode, Maria Wadl, Alexander Zoufaly, Sabine Jordan, Markus J Kemper, Per Follin, Luise Müller, Lisa A King, Bettina Rosner, Udo Buchholz, Klaus Stark, Gérard Krause, None, Epidemic Profile of Shiga-Toxin–Producing Escherichia coli O104:H4 Outbreak in Germany The New England Journal of Medicine. ,vol. 365, pp. 1771- 1780 ,(2011) , 10.1056/NEJMOA1106483
Ewen Kirkness, Susmita Shrivastava, Qi Zheng, Jayati Bera, Joseph Icenogle, Emily Abernathy, Min-hsin Chen, William Bellini, Analysis of whole genome sequences of 16 strains of rubella virus from the United States ,(2013)
M Achtman, A surfeit of YATMs Journal of Clinical Microbiology. ,vol. 34, pp. 1870- 1870 ,(1996) , 10.1128/JCM.34.7.1870-1870.1996
M.R. Capobianchi, E. Giombini, G. Rozera, Next-generation sequencing technology in clinical virology. Clinical Microbiology and Infection. ,vol. 19, pp. 15- 22 ,(2013) , 10.1111/1469-0691.12056
Henrik Stranneheim, Joakim Lundeberg, Stepping stones in DNA sequencing Biotechnology Journal. ,vol. 7, pp. 1063- 1073 ,(2012) , 10.1002/BIOT.201200153
P. M. Hawkey, E. G. Smith, J. T. Evans, P. Monk, G. Bryan, H. H. Mohamed, M. Bardhan, R. N. Pugh, Mycobacterial Interspersed Repetitive Unit Typing of Mycobacterium tuberculosis Compared to IS6110-Based Restriction Fragment Length Polymorphism Analysis for Investigation of Apparently Clustered Cases of Tuberculosis Journal of Clinical Microbiology. ,vol. 41, pp. 3514- 3520 ,(2003) , 10.1128/JCM.41.8.3514-3520.2003
Brian D. Nordmann, Issues in biosecurity and biosafety International Journal of Antimicrobial Agents. ,vol. 36, pp. S66- S69 ,(2010) , 10.1016/J.IJANTIMICAG.2010.06.025