Sedimentary DNA Reveals Cyanobacterial Community Diversity over 200 Years in Two Perialpine Lakes.

作者: Marie-Eve Monchamp , Jean-Claude Walser , Francesco Pomati , Piet Spaak

DOI: 10.1128/AEM.02174-16

关键词: EutrophicationTaxonPhylumMelainabacteriaSpecies richnessCommunity structureBiologyEcologyPelagic zoneClade

摘要: ABSTRACT We reconstructed cyanobacterial community structure and phylogeny using DNA that was isolated from layers of stratified sediments spanning 200 years lake history in the perialpine lakes Greifensee Lake Zurich (Switzerland). Community analysis based on amplification sequencing a 400-nucleotide (nt)-long 16S rRNA fragment specific to Cyanobacteria revealed operational taxonomic units (OTUs) capturing whole phylum, including representatives newly characterized clade termed Melainabacteria, which shares common ancestry with has not been previously described lakes. The reconstruction richness phylogenetic validated data set consisting 40 pelagic microscopic counts each lake. identified OTUs assigned taxa known be present found strong significant relationship (adjusted R2 = 0.89; P IMPORTANCE Cyanobacterial blooms can produce toxins affect water quality, especially under eutrophic conditions, are consequence human-induced climate warming increased nutrient availability. Lakes worldwide have suffered regular over last century. lack long-term limits our understanding how these form. successfully past diversity communities two hundred by genes preserved Switzerland. changes time results existing collected same years. This work shows potential approach for addressing important ecological questions about effects changing environment ecology.

参考文章(63)
Eric Capo, Didier Debroas, Fabien Arnaud, Isabelle Domaizon, Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity Microbial Ecology. ,vol. 70, pp. 865- 875 ,(2015) , 10.1007/S00248-015-0627-2
B. Zolitschka, VARVED LAKE SEDIMENTS Encyclopedia of Quaternary Science. pp. 3105- 3114 ,(2007) , 10.1016/B0-44-452747-8/00065-X
Ingrid Chorus, Martin Welker, None, Toxic cyanobacteria in water: a guide to their public health consequences, monitoring and management. Toxic cyanobacteria in water: a guide to their public health consequences, monitoring and management.. ,(1999) , 10.1201/9781482295061
KATHLEEN R. STOOF-LEICHSENRING, LAURA S. EPP, MARTIN H. TRAUTH, RALPH TIEDEMANN, Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation. Molecular Ecology. ,vol. 21, pp. 1918- 1930 ,(2012) , 10.1111/J.1365-294X.2011.05412.X
Todd R. Miller, Katherine D. McMahon, Genetic diversity of cyanobacteria in four eutrophic lakes FEMS Microbiology Ecology. ,vol. 78, pp. 336- 348 ,(2011) , 10.1111/J.1574-6941.2011.01162.X
Johanna M. Rinta-Kanto, Matthew A. Saxton, Jennifer M. DeBruyn, Juliette L. Smith, Christopher H. Marvin, Kenneth A. Krieger, Gary S. Sayler, Gregory L. Boyer, Steven W. Wilhelm, The diversity and distribution of toxigenic Microcystis spp. in present day and archived pelagic and sediment samples from Lake Erie Harmful Algae. ,vol. 8, pp. 385- 394 ,(2009) , 10.1016/J.HAL.2008.08.026
Anna Rigosi, Cayelan C. Carey, Bas W. Ibelings, Justin D. Brookes, The interaction between climate warming and eutrophication to promote cyanobacteria is dependent on trophic state and varies among taxa Limnology and Oceanography. ,vol. 59, pp. 99- 114 ,(2014) , 10.4319/LO.2014.59.1.0099
Thomas Posch, Oliver Köster, Michaela M. Salcher, Jakob Pernthaler, Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming Nature Climate Change. ,vol. 2, pp. 809- 813 ,(2012) , 10.1038/NCLIMATE1581
Marco JL Coolen, Gerard Muyzer, W Irene C Rijpstra, Stefan Schouten, John K Volkman, Jaap S Sinninghe Damsté, Combined DNA and lipid analyses of sediments reveal changes in Holocene haptophyte and diatom populations in an Antarctic lake Earth and Planetary Science Letters. ,vol. 223, pp. 225- 239 ,(2004) , 10.1016/J.EPSL.2004.04.014
Bettina E Schirrmeister, Daniel A Dalquen, Maria Anisimova, Homayoun C Bagheri, Gene copy number variation and its significance in cyanobacterial phylogeny. BMC Microbiology. ,vol. 12, pp. 177- 177 ,(2012) , 10.1186/1471-2180-12-177