Robust singular value decomposition analysis of microarray data

作者: L. Liu , D. M. Hawkins , S. Ghosh , S. S. Young

DOI: 10.1073/PNAS.1733249100

关键词: Robust analysisMissing dataComputer scienceOutlierImputation (statistics)Microarray analysis techniquesData miningSingle passBioinformaticsExtreme value theorySingular value decomposition

摘要: … of the data table before analysis. We illustrate the method with a commercial data set. … This approach uses all of the observed data and does not require imputation of missing data…

参考文章(19)
A K Agarwal, C Monder, B Eckstein, P C White, Cloning and Expression of Rat cDNA Encoding Corticosteroid 11β-Dehydrogenase Journal of Biological Chemistry. ,vol. 264, pp. 18939- 18943 ,(1989) , 10.1016/S0021-9258(19)47248-7
Åsmund Ukkelberg, Odd S. Borgen, Outlier detection by robust alternating regression Analytica Chimica Acta. ,vol. 277, pp. 489- 494 ,(1993) , 10.1016/0003-2670(93)80460-3
Marie L. Ricketts, Julie M. Verhaeg, Iwona Bujalska, Alexander J. Howie, William E. Rainey, Paul M. Stewart, Immunohistochemical Localization of Type 1 11β-Hydroxysteroid Dehydrogenase in Human Tissues1 The Journal of Clinical Endocrinology and Metabolism. ,vol. 83, pp. 1325- 1335 ,(1998) , 10.1210/JCEM.83.4.4706
JAN M. H. BRANDE, MAIKEL P. PEPPELENBOSCH, SANDER J. H. DEVENTER, Treating Crohn's disease by inducing T lymphocyte apoptosis. Annals of the New York Academy of Sciences. ,vol. 973, pp. 166- 180 ,(2002) , 10.1111/J.1749-6632.2002.TB04628.X
Baljit S. Sappal, Siddhartha S. Ghosh, Benjamin Shneider, Ajit Kadakol, Jayanta Roy Chowdhury, Namita Roy Chowdhury, A Novel Intronic Mutation Results in the Use of a Cryptic Splice Acceptor Site within the Coding Region of UGT1A1, Causing Crigler-Najjar Syndrome Type 1 Molecular Genetics and Metabolism. ,vol. 75, pp. 134- 142 ,(2002) , 10.1006/MGME.2001.3284
Ching–Shan Huang, May–Jen Huang, En–Sung Chen, Pi–Feng Chang, Wu–Charng Chen, Glucose-6-phosphate dehydrogenase deficiency, the UDP-glucuronosyl transferase 1A1 gene, and neonatal hyperbilirubinemia Gastroenterology. ,vol. 123, pp. 127- 133 ,(2002) , 10.1053/GAST.2002.34173
C. Croux, P. Filzmoser, G. Pison, P. J. Rousseeuw, Fitting multiplicative models by robust alternating regressions Statistics and Computing. ,vol. 13, pp. 23- 36 ,(2003) , 10.1023/A:1021979409012
Rajani Ravi, Atul Bedi, Potential methods to circumvent blocks in apoptosis in lymphomas. Current Opinion in Oncology. ,vol. 14, pp. 490- 503 ,(2002) , 10.1097/00001622-200209000-00004
A. I. Su, M. P. Cooke, K. A. Ching, Y. Hakak, J. R. Walker, T. Wiltshire, A. P. Orth, R. G. Vega, L. M. Sapinoso, A. Moqrich, A. Patapoutian, G. M. Hampton, P. G. Schultz, J. B. Hogenesch, Large-scale analysis of the human and mouse transcriptomes Proceedings of the National Academy of Sciences of the United States of America. ,vol. 99, pp. 4465- 4470 ,(2002) , 10.1073/PNAS.012025199