Recognition of protein coding regions in DNA sequences
作者： James W. Fickett
关键词: DNA sequencing 、 Computational biology 、 Open reading frame 、 Biology 、 Genetics 、 DNA 、 Noncoding DNA 、 Gene 、 Intergenic region 、 Coding (social sciences) 、 Protein coding
摘要: We give a test for protein coding regions which is based on simple and universal differences between protein-coding noncoding DNA. The enough to use without computer completely objective. has been thoroughly proven 400,000 bases of sequence data: it misclassifies 5% the tested gives an answer "No Opinion" one fifth time. predict some new in published sequences.
oup.com
core.ac.uk
oxfordjournals.org
sci-hub.se 参考文章(31)
J. Hindley, G.A. Phear, Sequence of 1019 nucleotides encompassing one of the inverted repeats from the yeast 2 μm plasmid Nucleic Acids Research. ,vol. 7, pp. 361- 375 ,(1979) , 10.1093/NAR/7.2.361
Marc J. Shulman, Charles M. Steinberg, Nicholas Westmoreland, The coding function of nucleotide sequences can be discerned by statistical analysis. Journal of Theoretical Biology. ,vol. 88, pp. 409- 420 ,(1981) , 10.1016/0022-5193(81)90274-5
R Breathnach, P Chambon, Organization and Expression of Eucaryotic Split Genes Coding for Proteins Annual Review of Biochemistry. ,vol. 50, pp. 349- 383 ,(1981) , 10.1146/ANNUREV.BI.50.070181.002025
Jürgen Brosius, Thomas J. Dull, Donald D. Sleeter, Harry F. Noller, Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli Journal of Molecular Biology. ,vol. 148, pp. 107- 127 ,(1981) , 10.1016/0022-2836(81)90508-8
John C. W. Shepherd, Periodic correlations in DNA sequences and evidence suggesting their evolutionary origin in a comma-less genetic code Journal of Molecular Evolution. ,vol. 17, pp. 94- 102 ,(1981) , 10.1007/BF01732679
Hisako Ohtsubo, Kate Nyman, Wlodzimierz Doroszkiewicz, Eiichi Ohtsubo, Multiple copies of iso-insertion sequences of IS1 in Shigella dysenteriae chromosome. Nature. ,vol. 292, pp. 640- 643 ,(1981) , 10.1038/292640A0
Piet Borst, Leslie A. Grivell, One gene's intron is another gene's exon Nature. ,vol. 289, pp. 439- 440 ,(1981) , 10.1038/289439A0
J. Brosius, M. L. Palmer, P. J. Kennedy, H. F. Noller, Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 75, pp. 4801- 4805 ,(1978) , 10.1073/PNAS.75.10.4801
R. Grantham, C. Gautier, M. Gouy, Codon frequencies in 119 individual genes confirm corsistent choices of degenerate bases according to genome type Nucleic Acids Research. ,vol. 8, pp. 1893- 1912 ,(1980) , 10.1093/NAR/8.9.1893
M. Meijer, E. Beck, F. G. Hansen, H. E. Bergmans, W. Messer, K. von Meyenburg, H. Schaller, Nucleotide sequence of the origin of replication of the Escherichia coli K-12 chromosome. Proceedings of the National Academy of Sciences. ,vol. 76, pp. 580- 584 ,(1979) , 10.1073/PNAS.76.2.580