Computational approaches to modeling the conserved structural core among distantly homologous proteins
作者： Matthew Ewald Menke
DOI:
关键词: Protein superfamily 、 Core (graph theory) 、 Chemical engineering 、 Computational biology 、 Computer science
摘要:
参考文章(104)
Michael Gribskov, Roland Lothy, David Eisenberg, [9] Profile analysis Methods in Enzymology. ,vol. 183, pp. 146- 159 ,(1990) , 10.1016/0076-6879(90)83011-W
Geoffrey J. Barton, Michael J.E. Sternberg, A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons. Journal of Molecular Biology. ,vol. 198, pp. 327- 337 ,(1987) , 10.1016/0022-2836(87)90316-0
R. Kolodny, N. Linial, Approximate protein structural alignment in polynomial time. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 101, pp. 12201- 12206 ,(2004) , 10.1073/PNAS.0404383101
Jessica H Fong, Amy E Keating, Mona Singh, Predicting specificity in bZIP coiled-coil protein interactions Genome Biology. ,vol. 5, pp. 1- 10 ,(2004) , 10.1186/GB-2004-5-2-R11
D. Goldman, S. Istrail, C.H. Papadimitriou, Algorithmic aspects of protein structure similarity foundations of computer science. pp. 512- 521 ,(1999) , 10.1109/SFFCS.1999.814624
R. Nussinov, H. J. Wolfson, Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques Proceedings of the National Academy of Sciences of the United States of America. ,vol. 88, pp. 10495- 10499 ,(1991) , 10.1073/PNAS.88.23.10495
Ingvar Eidhammer, Inge Jonassen, William R. Taylor, Structure Comparison and Structure Patterns Journal of Computational Biology. ,vol. 7, pp. 685- 716 ,(2000) , 10.1089/106652701446152
Mikita Suyama, Yo Matsuo, Ken Nishikawa, Comparison of protein structures using 3D profile alignment Journal of Molecular Evolution. ,vol. 44, ,(1997) , 10.1007/PL00000065
Christian Lemmen, Thomas Lengauer, Gerhard Klebe, FlexS: A Method for Fast Flexible Ligand Superposition Journal of Medicinal Chemistry. ,vol. 41, pp. 4502- 4520 ,(1998) , 10.1021/JM981037L
O. Dror, H. Benyamini, R. Nussinov, H. Wolfson, MASS: multiple structural alignment by secondary structures. Bioinformatics. ,vol. 19, pp. 95- 104 ,(2003) , 10.1093/BIOINFORMATICS/BTG1012