Succession and phylogenetic composition of bacterial communities responsible for the composting process of rice straw estimated by PCR-DGGE analysis
作者： Vila Ratri Cahyani , Kazuo Matsuya , Susumu Asakawa , Makoto Kimura
DOI: 10.1080/00380768.2003.10410052
关键词: 16S ribosomal RNA 、 Thermophile 、 Phylogenetic tree 、 Bacteria 、 Ecological succession 、 Compost 、 Botany 、 Rice straw 、 Biology 、 Pcr dgge
摘要: Abstract PCR-DGGE analysis followed by sequencing of 16S rDNA was applied to reveal the succession and phylogenetic composition bacterial communities responsible for composting process rice straw (RS). RS under exhibited more complex DGGE band patterns with numerous bands diversification in intensity than initial materials. The materials were statistically divided into four groups, namely those characterizing associated pre-composting stage, thermophilic, middle, curing stages compost, which corresponded exactly same grouping obtained from PLFA pattern samples (Cahyani et al. 2002: Soil Sci. Plant Nutr., 48, 735-743). Different members characterized respective as follows: a-Proteobacteria materials, thermophilic Bacillus spp. actinomy...
sci-hub.se 参考文章(60)
G. Muyzer, C. Santegoeds, A. D. L. Akkermans, G. A. Kowalchuk, C. Wawer, H. Schäfer, U. Nübel, I. M. Head, T. Brinkhoff, J. D. van Elsas, F. J. de Bruijn, Denaturing gradient gel electrophoresis (DGGE) in microbial ecology. Molecular microbial ecology manual. Volumes 1 and 2. pp. 743- 769 ,(2004)
M. Andersson, M. Laukkanen, E-L. Nurmiaho-Lassila, F.A. Rainey, S.I. Niemelä, M. Salkinoja-Salonen, Bacillus thermosphaericus sp. nov. a New Thermophilic Ureolytic Systematic and Applied Microbiology. ,vol. 18, pp. 203- 220 ,(1995) , 10.1016/S0723-2020(11)80391-7
Barry Holmes, The Genera Flavobacterium,Sphingobacterium, and Weeksella Springer, New York, NY. pp. 3620- 3630 ,(1992) , 10.1007/978-1-4757-2191-1_36
James A. Lippincott, Barbara B. Lippincott, Mortimer P. Starr, The Genus Agrobacterium Springer Berlin Heidelberg. pp. 842- 855 ,(1981) , 10.1007/978-3-662-13187-9_68
T Beffa, M Blanc, P F Lyon, G Vogt, M Marchiani, J L Fischer, M Aragno, Isolation of Thermus strains from hot composts (60 to 80 degrees C). Applied and Environmental Microbiology. ,vol. 62, pp. 1723- 1727 ,(1996) , 10.1128/AEM.62.5.1723-1727.1996
Ulf Hengstmann, Kuk-Jeong Chin, Peter H Janssen, Werner Liesack, None, Comparative Phylogenetic Assignment of Environmental Sequences of Genes Encoding 16S rRNA and Numerically Abundant Culturable Bacteria from an Anoxic Rice Paddy Soil Applied and Environmental Microbiology. ,vol. 65, pp. 5050- 5058 ,(1999) , 10.1128/AEM.65.11.5050-5058.1999
Beverly K. Pierson, Richard W. Castenholz, The Family Chloroflexaceae Springer, New York, NY. pp. 3754- 3774 ,(1992) , 10.1007/978-1-4757-2191-1_44
SUSAN Leschine, BRUCE J Paster, ERCOLE Canale-Parola, Free-Living Saccharolytic Spirochetes: The Genus Spirochaeta Springer, New York, NY. pp. 3524- 3536 ,(1992) , 10.1007/978-1-4757-2191-1_29
Hans Reichenbach, The Order Cytophagales Springer, New York, NY. pp. 3631- 3675 ,(1992) , 10.1007/978-1-4757-2191-1_37
Albert Balows, The Prokaryotes : a handbook on the biology of bacteria : ecophysiology, isolation, identification, applications Springer-Verlag. ,(1992)