Mechanisms of Scaffold-Mediated Microcompartment Assembly and Size Control.

作者: Michael F Hagan , Farzaneh Mohajerani , Evan Sayer , Koe Inlow , Christopher Neil

DOI: 10.1021/ACSNANO.0C05715

关键词: ScaffoldSynthetic biologyBiophysicsShell (structure)OrganelleScaffold proteinSelf-assemblyChemistryCarboxysomeBacterial microcompartment

摘要: This article describes a theoretical and computational study of the dynamical assembly protein shell around complex consisting many cargo molecules long, flexible scaffold molecules. Our is motivated by bacterial microcompartments, which are proteinaceous organelles that assemble condensed droplet enzymes reactants. As in examples cytoplasmic liquid-liquid phase separation, condensation microcompartment interior driven proteins have weak multivalent interactions with cargo. results predict size, amount encapsulated cargo, pathways depend sensitively on properties scaffold, including its length valency scaffold-cargo interactions. Moreover, ability self-assembling shells to change their size accommodate different lengths depends crucially whether spontaneous curvature radius smaller or larger than characteristic elastic scale shell. Beyond natural these important implications for synthetic biology efforts target alternative encapsulation microcompartments viral shells. More broadly, elucidate how cells exploit coupling between self-assembly separation organize interiors.

参考文章(175)
R. Zandi, D. Reguera, R. F. Bruinsma, W. M. Gelbart, J. Rudnick, Origin of icosahedral symmetry in viruses Proceedings of the National Academy of Sciences of the United States of America. ,vol. 101, pp. 15556- 15560 ,(2004) , 10.1073/PNAS.0405844101
Clément Aussignargues, Bradley C Paasch, Raul Gonzalez-Esquer, Onur Erbilgin, Cheryl A Kerfeld, Bacterial microcompartment assembly: The key role of encapsulation peptides Communicative & Integrative Biology. ,vol. 8, ,(2015) , 10.1080/19420889.2015.1039755
Ran Zhang, Per Linse, Icosahedral capsid formation by capsomers and short polyions Journal of Chemical Physics. ,vol. 138, pp. 154901- 154901 ,(2013) , 10.1063/1.4799243
E. C. Dykeman, P. G. Stockley, R. Twarock, Solving a Levinthal's paradox for virus assembly identifies a unique antiviral strategy Proceedings of the National Academy of Sciences of the United States of America. ,vol. 111, pp. 5361- 5366 ,(2014) , 10.1073/PNAS.1319479111
Remy Kusters, Hsiang-Ku Lin, Roya Zandi, Irina Tsvetkova, Bogdan Dragnea, Paul van der Schoot, Role of charge regulation and size polydispersity in nanoparticle encapsulation by viral coat proteins Journal of Physical Chemistry B. ,vol. 119, pp. 1869- 1880 ,(2015) , 10.1021/JP5108125
Roya Zandi, Paul van der Schoot, Size Regulation of ss-RNA Viruses Biophysical Journal. ,vol. 96, pp. 9- 20 ,(2009) , 10.1529/BIOPHYSJ.108.137489
Hung D. Nguyen, Vijay S. Reddy, Charles L. Brooks III, Invariant Polymorphism in Virus Capsid Assembly Journal of the American Chemical Society. ,vol. 131, pp. 2606- 2614 ,(2009) , 10.1021/JA807730X
Eric C. Dykeman, Peter G. Stockley, Reidun Twarock, Packaging Signals in Two Single-Stranded RNA Viruses Imply a Conserved Assembly Mechanism and Geometry of the Packaged Genome Journal of Molecular Biology. ,vol. 425, pp. 3235- 3249 ,(2013) , 10.1016/J.JMB.2013.06.005
R. Hariharan, C. Biver, J. Mays, W. B. Russel, Ionic strength and curvature effects in flat and highly curved polyelectrolyte brushes Macromolecules. ,vol. 31, pp. 7506- 7513 ,(1998) , 10.1021/MA971818G