Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

作者: Christopher B Ford , Rupal R Shah , Midori Kato Maeda , Sebastien Gagneux , Megan B Murray

DOI: 10.1038/NG.2656

关键词: Whole genome sequencingLineage (genetic)Mutation (genetic algorithm)VirologyMutation rateMicrobial geneticsDrugMycobacterium tuberculosisTuberculosisBiology

摘要: A critical question in tuberculosis control is why some strains of Mycobacterium are preferentially associated with multiple drug resistances. We demonstrate that M. from Lineage 2 (East Asian lineage and Beijing sublineage) acquire resistances vitro more rapidly than 4 (Euro-American lineage) this higher rate can be attributed to a mutation rate. Moreover, the correlates well bacterial humans as determined by whole genome sequencing clinical isolates. Finally, using stochastic mathematical model, we observed differences predict substantially probability patients infected susceptible strain will harbor multidrug resistant bacteria at time diagnosis. These data suggest interventions prevent emergence should target treatment-related risk factors.

参考文章(73)
S Gagneux, S Borrell, Infectiousness, reproductive fitness and evolution of drug-resistant Mycobacterium tuberculosis. International Journal of Tuberculosis and Lung Disease. ,vol. 13, pp. 1456- 1466 ,(2009)
Motoo Kimura, Tomoko Ohta, On the rate of molecular evolution Journal of Molecular Evolution. ,vol. 1, pp. 1- 17 ,(1971) , 10.1007/BF01659390
Zarir F. Udwadia, Lancelot M. Pinto, Mukund W. Uplekar, Tuberculosis Management by Private Practitioners in Mumbai, India: Has Anything Changed in Two Decades? PLoS ONE. ,vol. 5, pp. e12023- ,(2010) , 10.1371/JOURNAL.PONE.0012023
Antonio Oliver, Rafael Cantón, Pilar Campo, Fernando Baquero, Jesús Blázquez, High Frequency of Hypermutable Pseudomonas aeruginosa in Cystic Fibrosis Lung Infection Science. ,vol. 288, pp. 1251- 1253 ,(2000) , 10.1126/SCIENCE.288.5469.1251
Dick Menzies, Andrea Benedetti, Anita Paydar, Sarah Royce, Madhukar Pai, William Burman, Andrew Vernon, Christian Lienhardt, Standardized Treatment of Active Tuberculosis in Patients with Previous Treatment and/or with Mono-resistance to Isoniazid: A Systematic Review and Meta-analysis PLoS Medicine. ,vol. 6, pp. e1000150- ,(2009) , 10.1371/JOURNAL.PMED.1000150
Lucinda M. C. Hall, Stephanie K. Henderson-Begg, Hypermutable bacteria isolated from humans--a critical analysis. Microbiology. ,vol. 152, pp. 2505- 2514 ,(2006) , 10.1099/MIC.0.29079-0
Yu Pang, Yang Zhou, Bing Zhao, Guan Liu, Guanglu Jiang, Hui Xia, Yuanyuan Song, Yuanyuan Shang, Shengfen Wang, Yan-lin Zhao, Spoligotyping and Drug Resistance Analysis of Mycobacterium tuberculosis Strains from National Survey in China PLoS ONE. ,vol. 7, pp. e32976- ,(2012) , 10.1371/JOURNAL.PONE.0032976
Ali Akbar Velayati, Mohammad Reza Masjedi, Parissa Farnia, Payam Tabarsi, Jalladein Ghanavi, Abol Hassan ZiaZarifi, Sven Eric Hoffner, Emergence of New Forms of Totally Drug-Resistant Tuberculosis Bacilli: Super Extensively Drug-Resistant Tuberculosis or Totally Drug-Resistant Strains in Iran Chest. ,vol. 136, pp. 420- 425 ,(2009) , 10.1378/CHEST.08-2427